Showing posts with label Holocene. Show all posts
Showing posts with label Holocene. Show all posts

Thursday, April 28, 2022

[PaleoOrnithology • 2021] Gallirallus astolfoi • An Extinct New Rail Species (Aves: Rallidae) from Rapa Island, French Polynesia


Gallirallus astolfoi 
 Salvador, Anderson & Tennyson, 2021


Abstract
A new species of rail, Gallirallus astolfoi sp. nov., is described from Rapa Island (Rapa Iti), French Polynesia. The holotype (and single known specimen) is a left tarsometatarsus recovered from Tangarutu Cave. This rail species was apparently endemic to Rapa Iti and potentially flightless. It became extinct after human colonisation of the island.

Keywords: endemic species; flightlessness; Gallirallus astolfoi sp. nov.; Holocene; Rapa Iti


  Left tarsometatarsus (holotype, NMNZ S.044399) of Gallirallus astolfoi sp. nov. in different views:
 (A) anterior, (B) caudal, (C) lateral, (D) medial, (E) proximal, (F) distal.

 

Family Rallidae

Genus Gallirallus Lafresnaye,1841

Gallirallus astolfoi sp. nov.
 
rail (cf. Gallirallus): Tennyson & Anderson, 2012: 108.
 
Holotype: NMNZ S.044399 (left tarsometatarsus; A. Anderson col. 21/vii/2002).

Type locality: French Polynesia, Rapa Island (Rapa Iti), Tangarutu Cave, Section S1 (30–40 cm).

Diagnosis: Tarsometatarsus small (ca. 34.5 mm long), of delicate appearance, with narrow and shallow shaft, and narrow trochleae (particularly the trochlea metatarsi II).

Etymology: The specific epithet honours Astolfo, one of Charlemagne’s fictional paladins. In the epic Orlando Furioso, Astolfo becomes trapped on a remote island because of the sorceress Alcina.


Conclusions: 
Gallirallus astolfoi sp. nov. from Rapa Iti is the seventh extinct species in the genus to be described from French Polynesia (Table 1), excluding the potential undescribed one mentioned above. Excluding the volant G. philippensis, the species geographically closest to G. astolfoi sp. nov. is G. steadmani from Tubuai, ca. 700 km NW from Rapa Iti. As new specimens continue to be discovered and described, the scenario of a multitude of endemic rail species across the Pacific Islands is becoming more evident, offering further evidence in support of the above-mentioned hypothesis [8,30]. Likewise, the list of species extinct after human contact during the past millennia is becoming more extensive, adding to the corpus of data on the demise of insular faunas.
 

 Rodrigo B. Salvador , Atholl Anderson and Alan J. D. Tennyson. 2021. An Extinct New Rail (Gallirallus, Aves: Rallidae) Species from Rapa Island, French Polynesia. Taxonomy. 2021, 1(4), 448-457. DOI: 10.3390/taxonomy1040032

Wednesday, March 9, 2022

[Paleontology • 2022] Hanyusuchus sinensis • An Intermediate Crocodylian (Crocodylia: Gavialidae) linking Two Extant Gharials from the Bronze Age of China and Its Human-induced Extinction


Hanyusuchus sinensis
Iijima, Qiao, Lin, Peng, Yoneda & Liu, 2022
 
life restoration by Hikaru Amemiya  twitter.com/WANIwaniamemi

Abstract
A solid phylogenetic framework is the basis of biological studies, yet higher level relationships are still unresolved in some major vertebrate lineages. One such group is Crocodylia, where the branching pattern of three major families (Alligatoridae, Crocodylidae and Gavialidae) has been disputed over decades due to the uncertain relationship of two slender-snouted lineages, gavialines and tomistomines. Here, we report a bizarre crocodylian from the Bronze Age of China, which shows a mosaic of gavialine and tomistomine features across the skeleton, rendering support to their sister taxon relationship as molecular works have consistently postulated. Gavialine characters of the new Chinese crocodylian include a novel configuration of the pterygoid bulla, a vocal structure known in mature male Indian gharials. Extinct gavialines have repeatedly evolved potentially male-only acoustic apparatus of various shapes, illuminating the deep history of sexual selection on acoustic signalling in a slender-snouted group of crocodylians. Lastly, a cutmark analysis combined with accelerator mass spectrometry (AMS) radiocarbon dating of bone remains demonstrated that two individuals from Shang and Zhou dynasties in Guangdong, China, suffered head injuries and decapitation. Archaeological evidence together with historical accounts suggests the human-induced extinction of this unique crocodylian only a few hundred years ago.

Keywords: crocodylia, phylogeny, Holocene, extinction, sexual selection, acoustics
 

Life restoration of Hanyusuchus sinensis, gen. et sp. nov. from the Bronze Age of southern China
(illustration: Hikaru Amemiya).

Anatomy of Hanyusuchus sinensis, gen. et sp. nov. from the Bronze Age of southern China.

 (a–d) Holotype skull (XM 12-1558) in dorsal (a,b) and ventral (c,d) views.

 (e) Posterior skull of a paratype (XM 12-1557) in ventral view. (f) Three-dimensional reconstruction of the boxed part in (e), highlighting the pterygoid bulla (purple volume). (g) Three-dimensional reconstruction of the pterygoid bullae and nasopharyngeal duct (purple volume) in Gavialis gangeticus (UF 118998).

(h–k) Holotype mandible (XM 12-1558) in dorsal (h,i) and left lateral (j,k) views.
(l–n) Left femur of the holotype (XM 12-1558) in lateral (l), proximal (m) and distal (n) views.
(o,p) Axis of a paratype (SM E1623) in left lateral (o) and ventral (p) views.
(q,r) Third cervical vertebra of the holotype (XM 12-1558) in left lateral (q) and ventral (r) views.

(s) Composite reconstruction of H. sinensis scaled to the holotype (XM 12-1558) compared with a human (1.8 m height).

 an, angular; ar, articular; bo, basioccipital; d, dentary; ect, ectopterygoid; emf, external mandibular fenestra; en, external naris; f, frontal; hp, hypapophysis; itf, infratemporal fenestra; j, jugal; l, lacrimal; m, maxilla; n, nasal; o, orbit; pa, parietal, pal, palatine; pf, prefrontal; pm, premaxilla; po, postorbital; pt, pterygoid, q, quadrate; qj, quadratojugal; sa, surangular; sof, soborbital fenestra; sq, squamosal; stf, supratemporal fenestra. Scale bars are 10 cm. (Online version in colour.)


Systematics
Crocodylia Gmelin, 1789 (sensu Benton and Clark, 1988).

Gavialidae Adams, 1854 (sensu Brochu, 2003).

Hanyusuchus sinensis gen. et sp. nov.

 Diagnosis: A large slender-snouted crocodylian with five premaxillary, 16 maxillary and 18 dentary teeth; seventh maxillary tooth largest in the anterior-mid maxilla; medial wall of the last three maxillary alveoli within the suborbital fenestrae swollen; dorsal half of the prefrontal pillar narrow anteroposteriorly, and the medial process of the pillar dorsoventrally tall and anteroposteriorly short; interfenestral bar wider than one half of the interorbital distance; postorbital and squamosal parts of the skull table slope laterally; a shallow fossa extending posteriorly from the supratemporal fenestra onto the dorsal squamosal surface (autapomorphy); a pair of deep depressions anterior to the internal choana associated with the expansion of the posterior chamber of the pterygoid bulla; exoccipital sending a robust process ventrally to the basioccipital tubera; a pair of knob-like hypapophyses on the ventral surface of axial and third cervical centra; anterior margin of dorsal midline osteoderms with anterior process; reduced medial condyle of the femur (figure 2a–r; see electronic supplementary material, part I and II and figures S2–S21 for full description and comparisons, and electronic supplementary material, tables S3–S5 for measurements).

Etymology: The generic name after Han Yu (a Chinese government official and poet during the Tang dynasty) + suchus (Latin for Greek soûkhos, the crocodile god Sobek), and the specific epithet after sinae (Latin for China) + ensis (Latin for ‘from’).

Distribution: Archaeological records and historical literature revealed the past occurrences of H. sinensis across Fujian, Guangdong, Guangxi, and Hainan provinces in southeastern China from the late fourth millennium BC to the mid second millennium AD (figure 1; electronic supplementary material, figure S1 and tables S1 and S2).

   

   



Masaya Iijima, Yu Qiao, Wenbin Lin, Youjie Peng, Minoru Yoneda and Jun Liu. 2022. An Intermediate Crocodylian linking Two Extant Gharials from the Bronze Age of China and Its Human-induced Extinction. Proc. R. Soc. B.. 28920220085. DOI: 10.1098/rspb.2022.0085


Friday, April 30, 2021

[Paleontology • 2021] Voay robustus • Paleogenomics Illuminates the Evolutionary History of the Extinct Holocene “horned” Crocodile of Madagascar


Voay robustus (Grandidier & Vaillant, 1872)

in Hekkala, Gatesy, Narechania, ... et Amato, 2021. 
Paintings of crocodylians are by C. Buell, 
photo of Voay (AMNH FR-3101) is by E. Hekkala.

Abstract
Ancient DNA is transforming our ability to reconstruct historical patterns and mechanisms shaping modern diversity and distributions. In particular, molecular data from extinct Holocene island faunas have revealed surprising biogeographic scenarios. Here, we recovered partial mitochondrial (mt) genomes for 1300–1400 year old specimens (n = 2) of the extinct “horned” crocodile, Voay robustus, collected from Holocene deposits in southwestern Madagascar. Phylogenetic analyses of partial mt genomes and tip-dated timetrees based on molecular, fossil, and stratigraphic data favor a sister group relationship between Voay and Crocodylus (true crocodiles). These well supported trees conflict with recent morphological systematic work that has consistently placed Voay within Osteolaeminae (dwarf crocodiles and kin) and provide evidence for likely homoplasy in crocodylian cranial anatomy and snout shape. The close relationship between Voay and Crocodylus lends additional context for understanding the biogeographic origins of these genera and refines competing hypotheses for the recent extinction of Voay from Madagascar.


Voay robustus (Grandidier & Vaillant, 1872)
A skull of Voay robustus collected at Ampoza (44° 42.3’ E, 22° 18.9’ S, 570 m elevation) during the joint Mission Franco-Anglo-American expedition from 1927–1930 (White, 1930).

Phylogenetic relationships of Voay robustus based on partial mitochondrial (mt) genomes support a sister group relationship between Voay and a monophyletic Crocodylus (true crocodiles).
 The tree shown is based on ML analysis (partitioned by gene) and includes data from all four builds of the Voay mt genome. Bootstrap scores at each node are (from top to bottom): all four builds of Voay mt genome with partitioned ML analysis, Voay AMNH FR-3101 C. porosus reference build with partitioned ML analysis, Voay AMNH FR-3101 Osteolaemus reference build with partitioned ML analysis, Voay AMNH FR-3103 C. porosus reference build with partitioned ML analysis, Voay AMNH FR-3103 Osteolaemus reference build with partitioned ML analysis, and all four builds of Voay mt genome with equally-weighted parsimony analysis. Bootstrap scores for the two internodes that bound the branching point of Voay are highlighted in red. All trees were rooted with bird, turtle, and lizard outgroups (not shown). Higher level taxa are delimited by brackets to the right of species names. Paintings of crocodylians are by C. Buell, and photo of Voay (AMNH FR-3101) is by E. Hekkala.

    

Tip-dated Bayesian timetree showing the phylogenetic relationships of Voay robustus relative to extant and extinct crocodylids with a mapping of geographic distributions (colored squares at tips of branches).
Bayesian posterior probabilities are at nodes; support scores for the two internodes that bound the branching point of Voay are highlighted (red). Optimization of geographic regions to internal nodes (colored circles) is based on equally-weighted parsimony and implies an African ancestry for the overall clade with minimally two migrations to Australia/Asia, two to the New World, and two to Madagascar. An identical mapping of ancestral areas results for minimum area change (MAC) parsimony analysis. The Voay AMNH FR-3101 C. porosus mt genome build (partitioned by 1st, 2nd, 3rd codons) was employed in combination with morphological characters and stratigraphic data from Lee and Yates (2018). Taxa that are distantly related to Voay are pruned from the figure; for the complete timetree, see Supplementary Data 2. Paintings of crocodylians are by C. Buell; photo of Voay (AMNH FR-3101) is by E. Hekkala.



E. Hekkala, J. Gatesy, A. Narechania, R. Meredith, M. Russello, M. L. Aardema, E. Jensen, S. Montanari, C. Brochu, M. Norell and G. Amato. 2021. Paleogenomics Illuminates the Evolutionary History of the Extinct Holocene “horned” Crocodile of Madagascar, Voay robustus. Communications Biology. 4: 505. DOI: 10.1038/s42003-021-02017-0

Extinct 'horned' crocodile gets new spot in the tree of life
New ancient DNA-based study on Madagascar crocodile suggests that modern crocodiles likely originated in Africa


Friday, April 23, 2021

[PaleoMammalogy • 2021] Crateromys ballik, Carpomys dakal & Batomys cagayanensis • Three New Extinct Species from the Endemic Philippine Cloud Rat Radiation (Rodentia, Muridae, Phloeomyini)

 

Crateromys ballikCarpomys dakal Batomys cagayanensis  

Ochoa, Mijares, Piper, Reyes & Heaney, 2021
Drawing by Velizar Simeonovski.
 
Abstract
The 18 extant members of the Tribe Phloeomyini, the “cloud rats,” constitute an endemic Philippine radiation of arboreal herbivores that range in size from ca. 18 g to 2.7 kg, most occurring in cloud forest above 1,200 m elevation. Although calibrated phylogenies indicate that the Phloeomyini is estimated to have begun diversifying within the Philippines by ca. 10–11 million years ago, no extinct fossil species have been described, severely limiting our understanding of this distinctive radiation. Our studies of fossil and subfossil small mammal assemblages from the lowland Callao Caves complex in NE Luzon, Philippines, have produced specimens of Phloeomyini that date from ca. 67,000 BP to the Late Holocene (ca. 4,000 to 2,000 BP). We identify three extinct species that we name as new members assigned to the genera Batomys, Carpomys, and Crateromys, distinguished from congeners by body size, distinctive dental and other morphological features, and occupancy of a habitat (lowland forest over limestone) that differs from the high-elevation mossy forest over volcanic soils occupied by their congeners. Batomys cagayanensis n. sp. is known only from two specimens from ca. 67,000 BP; Carpomys dakal n. sp. and Crateromys ballik n. sp. were present from ca. 67,000 BP to the Late Holocene. These add to the species richness and morphological diversity of this endemic Philippine radiation of large folivores, and show specifically that the lowland fauna of small mammals on Luzon was more diverse in the recent past than it is currently, and that Luzon recently supported five species of giant rodents (ca. 1 kg or more). All three occurred contemporaneously with Homo luzonensis, and two, the new Carpomys and Crateromys, persisted until the Late Holocene when multiple exotic mammal species, both domestic and invasive, were introduced to Luzon, and new cultural practices (such as making pottery) became evident, suggesting that modern humans played a role in their extinction.

Keywords: biogeography, body size, extinction, fossils, Holocene, Luzon, oceanic islands, paleoecology, Pleistocene, zooarchaeology

Lower molar teeth of the new giant cloud rat,  Carpomys new species (left), compared with the two living species of Carpomys (middle) plus their close relative, Musseromys (right).
Photos by Lauren Nassef, 
Field Museum of Natural History

Collage of fossil cloud rat teeth.
Upper molars of Crateromys new species on the left.
Lower mandibles on the right: top, Carpomys new species. Middle, Batomys new species. Bottom, Crateromys new species.
 Photos by Lauren Nassef, 
Field Museum of Natural History

Artist’s conception of the three extinct cloud rats, based on their living relatives.
From the top, Crateromys, Carpomys, and Batomys.
Drawing by Velizar Simeonovski, 
Field Museum of Natural History

 Callao Cave interior.
Photo by Patricia Cabrera

Callao Cave excavation.
Photo by A. Mijares

   


Janine Ochoa, Armand S. B. Mijares, Philip J. Piper, Marian C. Reyes and Lawrence R. Heaney. 2021. Three New Extinct Species from the Endemic Philippine Cloud Rat Radiation (Rodentia, Muridae, Phloeomyini). Journal of Mammalogy. gyab023. DOI: 10.1093/jmammal/gyab023

Ang mga buot o “cloud rats” ay kabilang sa isang endemikong radiyasyon sa Pilipinas na tinatawag na tribong Phloeomyini. Ang salitang buot (buut/buwət) ay katawagang gamit sa ilang wika sa Cordillera at hilagang Luzon para sa mga cloud rat at mga kaanyong mammal na naninirahan o umaakyat sa mga punungkahoy. May labing-walong uri ng buot ang kasalukyang matatagpuan sa Pilipinas, at sila ay may timbang mula 18 gramo hanggang 2.7 kilo. Karamihan sa kanila ay naninirahan sa kagubatan na tinatawag na “cloud forest” na natatagpuan sa mga bundok na may elebasyon na higit sa 1,200 m. Base sa genetikong datos, tinatayang ang ninunong lipi ng mga buot ay nakarating sa Pilipinas 14 na milyong taon na ang nakalipas, ngunit dahil sa kakulangan ng mga fossil ay limitado ang ating kaalaman tungkol sa kanilang ebolusyon. Ang mga arkeolohikal na hukay sa iba’t ibang yungib ng Callao (probinsiya ng Cagayan, hilagang-silangang Luzon) ay nakapagtala ng mga fossil na buot na may edad na ~67,000 taon hanggang sa Late Holocene (~4,000–2,000 libong taon). Tatlong napuksang sarihay o species ang aming natuklasan, at base sa kanilang naiibang anyo at ekolohiya, sila ay ipinapangalan bilang bagong kasapi ng mga urihay na Batomys, Carpomys, at Crateromys. Ang Batomys cagayanensis n. sp. ay kilala lamang mula sa dalawang specimen na may edad na ~67,000 taong nakalipas. Ang Carpomys dakal n. sp. at Crateromys ballik n. sp. ay natagpuan sa mga suson ng lupa na may edad mula ~67,000 taon hanggang Late Holocene. Ipinapakita ng mga fossil na ito na mas maraming uri pa ng maliliit na mammal ang nabuhay noon kaysa sa ngayon, at ang Luzon ay minsang nagtaglay ng limang uri ng malalaking buot na may timbang na isang kilo o higit pa. Ang tatlong fossil na buot ay namuhay kasabay ng Homo luzonensis, isang bagong tuklas na uri ng tao noong Pleistocene. Ang Carpomys dakal at Crateromys ballik ay nabuhay hanggang Late Holocene at nalipol sa panahon kung saan iba’t ibang mga mammal na domestikado at ilang ang dinala ng tao sa Luzon; gayundin, lumitaw ang mga bagong tradisyon tulad ng pagpapalayok. Ipinapahiwatig nito na ang mga aktibidad ng modernong tao ay maaaring nagdulot ng kanilang pagkalipol.

biogeography, fossils, Holocene, Luzon, oceanic islands, pagkalipol (extinction), paleoecology, Pleistocene, sukat ng katawan (body size), zooarchaeology

Wednesday, August 14, 2019

[Ornithology • 2019] Ancient DNA from A 2,500-year-old Caribbean Fossil Places An Extinct Bird (Caracara creightoni) in A Phylogenetic Context


Caracara creightoni

in Oswald, Allen, Witt, et al., 2019. 

Highlights: 
• New methods and unique fossil sites offer potential to recover tropical bird aDNA.
• The bird, Caracara creightoni, went extinct upon human arrival in the Caribbean.
 • We obtained mitochondrial genome data from C. creightoni.
Caracara creightoni was sister to the two extant continental Caracara species.
• It shared a common ancestor with extant species during the Pleistocene.

Abstract
Since the late Pleistocene humans have caused the extinction of species across our planet. Placing these extinct species in the tree of life with genetic data is essential to understand the ecological and evolutionary implications of these losses. While ancient DNA (aDNA) techniques have advanced rapidly in recent decades, aDNA from tropical species, especially birds, has been historically difficult to obtain, leaving a gap in our understanding of the extinction processes that have influenced current distributions and biodiversity. Here we report the recovery of a nearly complete mitochondrial genome from a 2,500 year old (late Holocene) bone of an extinct species of bird, Caracara creightoni, recovered from the anoxic saltwater environment of a blue hole in the Bahamas. Our results suggest that this extinct species is sister (1.6% sequence divergence) to a clade containing the extant C. cheriway and C. plancus. Caracara creightoni shared a common ancestor with these extant species during the Pleistocene (1.2-0.4 MYA) and presumably survived on Cuba when the Bahamas was mostly underwater during Quaternary interglacial intervals (periods of high sea levels). Tropical blue holes have been collecting animals for thousands of years and will continue to improve our understanding of faunal extinctions and distributions. In particular, new aDNA techniques combined with radiocarbon dating from Holocene Bahamian fossils will allow us to place other extinct (species-level loss) and extirpated (population-level loss) vertebrate taxa in improved phylogenetic, evolutionary, biogeographic, and temporal contexts.

Keywords: aDNA, Bahamas, Extinction, Falconiformes, Holocene fossils

phylogeny of focal Caracara species and other members of the Falconidae.


 Jessica A. Oswald, Julia M. Allen, Kelsey E. Witt, Ryan A. Folk, Nancy A. Albury, David W. Steadman and Robert P. Guralnick. 2019. Ancient DNA from A 2,500-year-old Caribbean Fossil Places An Extinct Bird (Caracara creightoni) in A Phylogenetic Context. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2019.106576

Friday, June 22, 2018

[PaleoMammalogy • 2018] Junzi imperialis • New Genus of Extinct Holocene Gibbon associated with Humans in Imperial China


 Junzi imperialis
Turvey, Bruun, Ortiz, Hansford, Hu, Ding, Zhang & Chatterjee, 2018


Abstract
Although all extant apes are threatened with extinction, there is no evidence for human-caused extinctions of apes or other primates in postglacial continental ecosystems, despite intensive anthropogenic pressures associated with biodiversity loss for millennia in many regions. Here, we report a new, globally extinct genus and species of gibbon, Junzi imperialis, described from a partial cranium and mandible from a ~2200- to 2300-year-old tomb from Shaanxi, China. Junzi can be differentiated from extant hylobatid genera and the extinct Quaternary gibbon Bunopithecus by using univariate and multivariate analyses of craniodental morphometric data. Primates are poorly represented in the Chinese Quaternary fossil record, but historical accounts suggest that China may have contained an endemic ape radiation that has only recently disappeared.




 


Samuel T. Turvey, Kristoffer Bruun, Alejandra Ortiz, James Hansford, Songmei Hu, Yan Ding, Tianen Zhang and Helen J. Chatterjee. 2018. New Genus of Extinct Holocene Gibbon associated with Humans in Imperial China. Science. 360(6395); 1346-1349. DOI: 10.1126/science.aao4903

The noblewoman's ape
Human activities are causing extinctions across a wide array of taxa. Yet there has been no evidence of humans directly causing extinction among our relatives, the apes. Turvey et al. describe a species of gibbon found in a 2200- to 2300-year-old tomb ascribed to a Chinese noblewoman. This previously unknown species was likely widespread, may have persisted until the 18th century, and may be the first ape species to have perished as a direct result of human activities. This discovery may also indicate the existence of unrecognized primate diversity across Asia.

Vanished ape found in ancient Chinese tomb, giving clues to its disappearance  sciencemag.org/news/2018/06/vanished-ape-found-ancient-chinese-tomb-giving-clues-its-disappearance
Chinese grave reveals vanished gibbon genus  science.sciencemag.org/content/360/6395/1287
Ancient Royal Tomb Yields Strange New Ape Species  on.natgeo.com/2IadhQP via @NatGeo
Ancient Chinese tomb reveals previously unknown extinct species  fw.to/MiyAvFb

Tuesday, August 22, 2017

[PaleoOrnithology • 2017] Leucocarbo septentrionalis • Speciation, Range Contraction and Extinction in the Endemic New Zealand King Shag Complex


Leucocarbo septentrionalis
Rawlence, Till, Easton, Spencer, Schuckard, Melville, Scofield, Tennyson, Rayner & Waters, 2017

Kohatu Shag || DOI: 10.1016/j.ympev.2017.07.011 

Highlights
• New Zealand King Shag occupied a ‘relict’ distribution for at least the past 240 years.
• Ancient DNA indicates drop in genetic variability and range shortly after human arrival.
• Leucocarbo from northern New Zealand represent new extinct species, Kohatu Shag.
• New Zealand biodiversity hotspot for Phalacrocoracidae.

Abstract
New Zealand’s endemic King Shag (Leucocarbo carunculatus) has occupied only a narrow portion of the northeastern South Island for at least the past 240 years. However, pre-human Holocene fossil and archaeological remains have suggested a far more widespread distribution of the three Leucocarbo species (King, Otago, Foveaux) on mainland New Zealand at the time of Polynesian settlement in the late 13th Century CE. We use modern and ancient DNA, and morphometric and osteological analyses, of modern King Shags and Holocene fossil Leucocarbo remains to assess the pre-human distribution and taxonomic status of the King Shag on mainland New Zealand, and the resultant conservation implications. Our analyses show that the King Shag was formerly widespread around southern coasts of the North Island and the northern parts of the South Island but experienced population and lineage extinctions, and range contraction, probably after Polynesian arrival. This history parallels range contractions of other New Zealand seabirds. Conservation management of the King Shag should take into account this species narrow distribution and probable reduced genetic diversity. Moreover, combined genetic, morphometric and osteological analyses of prehistoric material from mainland New Zealand suggest that the now extinct northern New Zealand Leucocarbo populations comprised a unique lineage. Although these distinctive populations were previously assigned to the King Shag (based on morphological similarities and geographic proximity to modern Leucocarbo populations), we herein describe them as a new species, the Kohatu Shag (Leucocarbo septentrionalis). The extinction of this species further highlights the dramatic impacts Polynesians and introduced predators had on New Zealand’s coastal and marine biodiversity. The prehistoric presence of at least four species of Leucocarbo shag on mainland NZ further highlights its status as a biodiversity hotspot for Phalacrocoracidae.

Keywords: Ancient DNA; Extinct; Holocene fossil; King Shag; Kohatu Shag; Leucocarbo carunculatusLeucocarbo septentrionalis; New species; New Zealand


Fig. 8. Cranial skeletal elements of the holotype of Kohatu Shag (Leucocarbo septentrionalis; NMNZ S.34434). (a) Lateral view; (b) Dorsal view; (c) Ventral view. 



 Systematic palaeontology

PELECANIFORMES Sharpe, 1891
PHALACROCORACIDAE Reichenbach, 1849

LEUCOCARBO Bonaparte, 1857
 [type species (by subsequent designation, Ogilvie-Grant, 1898) Carbo bougainvillii Lesson, 1837]

LEUCOCARBO SEPTENTRIONALIS  SP. NOV.

English name: Kohatu Shag; Maori name: Kawau Kohatu

Type locality: Tokerau Beach, Doubtless Bay, Northland, New Zealand.

Etymology: septentrionalis from the medieval Latin for northern. This specific name recognises that this was the northernmost New Zealand member of the genus Leucocarbo. The name Kawau Kohatu in Maori is derived from the phrase ‘Te Ao Kohatu’ and means ‘shag [Kawau] from the stone age before our time [Te Ao Kohatu]’. The name recognises the species was found in Holocene fossil deposits of the iwi Ngati Kuri’s tribal area.

Distribution: Formerly of Northland, New Zealand.



Nicolas J. Rawlence, Charlotte E. Till, Luke J. Easton, Hamish G. Spencer, Rob Schuckard, David S. Melville, R. Paul Scofield, Alan J.D. Tennyson, Matt J. Rayner and Jonathan M. Waters. 2017. Speciation, Range Contraction and Extinction in the Endemic New Zealand King Shag Complex.  Molecular Phylogenetics and Evolution. in press. DOI: 10.1016/j.ympev.2017.07.011

Another extinct bird: Northland’s unique shag  blog.tepapa.govt.nz/2017/08/14/another-extinct-bird-northlands-unique-shag via @te_papa
Hiding in plain sight: how we found New Zealand’s newest seabird, the Kōhatu Shag"  sciblogs.co.nz/guestwork/2017/08/14/kohatu-shag   @sciblogsnz 

  

Monday, July 31, 2017

[Ornithology • 2017] Pyrrhula crassa • A New Extinct Species of Large Bullfinch (Aves: Fringillidae: Pyrrhula) from Graciosa Island (Azores, North Atlantic Ocean)


 [upper] Pyrrhula crassa  Rando, Pieper, Olson, Pereira & Alcover, 2017 
[lower] P. pyrrhula & P. murina. 


 possible aspect in life illustration: Pau Oliver. 

Abstract

A new species of extinct bullfinch, Pyrrhula crassa n. sp., is described from bones found in Furna do Calcinhas, a small cave situated at Caldeira, a volcano located in the southeastern portion of the Graciosa Island (Azores archipelago, North Atlantic Ocean). It is the first extinct passerine bird to be described from this archipelago. Both skull and post-cranial bones are larger in the new species than in its relatives, the Eurasian Bullfinch (P. pyrrhula) and the Azores Bullfinch or “Priolo” from São Miguel Island (P. murina), the new species being the largest known in this genus. The morphology of its humerus and the estimated wing length and surface area seem to indicate a flying ability similar to that of the extant P. murina. The possible sources of colonization of the genus into Azores, causes and chronology of extinction of the new species are discussed

Keywords: Aves, Fringillidae, Pyrrhula



FIGURE 5. A: Skull and mandible, lateral view. From top to bottom: Pyrrhula pyrrhula, LARC 2328; P. murina, SPEA 120; Pyrrhula crassa n. sp., based on premaxilla MCMa 2006.016 and mandible MCMa 2002.016. The missing parts have been added using the equivalent parts of P. murina. Scale = 1 cm.
B: From top to bottom: aspect of extant P. pyrrhulaP. murina; and possible aspect in life of Pyrrhula crassa n. sp. (colours are speculative). Art by Pau Oliver.

Systematic paleontology
Order Passeriformes Linnaeus, 1758
Family Fringillidae (Vigors, 1825)
Subfamily Carduelinae Vigors, 1825

Tribe Pyrrhulini
Genus Pyrrhula Brisson, 1760


Pyrrhula crassa n. sp.

 Etymology. From Latin, crassa, thick, referring to the large size of the species and particularly to its notably heavy bill. 
Vernacular names proposed: Greater Azores Bullfinch (English) – Priolo maior dos Açores (Portuguese).





 J. C. Rando, H. Pieper, Storrs L. Olson, F. Pereira and J. A. Alcover. 2017. A New Extinct Species of Large Bullfinch (Aves: Fringillidae: Pyrrhula) from Graciosa Island (Azores, North Atlantic Ocean). Zootaxa. 4282(3); 567–583.  DOI: 10.11646/zootaxa.4282.3.9

Resumo Uma nova espécie extinta de Pyrrhula, P. crassa n. sp., é descrita a partir de ossos encontrados em a Furna do Calcinhas, uma pequena caverna situada na Caldeira, vulcão localizado no sudoeste da ilha Graciosa (Arquipélago dos Açores, Atlântico Norte). É a primeira ave Passeriforme extinta descrita neste arquipélago. Tanto o crânio e os ossos do seu esqueleto pós-craniano são maiores que os dos seus parentes, o dom-fafe Pyrrhula pyrrhula e o priolo Pyrrhula murina. A nova espécie é a maior do gênero. A morfologia do úmero e o tamanho estimado das suas asas indica uma capacidade para o voo semelhante a o priolo. As possíveis fontes de colonização dos Açores por Pyrrhula e as causas e cronologia da extin- ção da espécie nova são discutidas.



A new bird which humans drove to extinction discovered in Azores
phy.so/420358270   @physorg_com
New species of Pyrrhula described for Graciosa Island
gba.uac.pt/media/press&events/ver.php?id=661

Friday, May 22, 2015

[Herpetology • 2015] Turtles and Tortoises of the World during the Rise and Global Spread of Humanity: First Checklist and Review of Extinct Pleistocene and Holocene Chelonians

Figure 14. Two species of extinct giant tortoises, Cylindraspis vosmaeri (larger, saddlebacked) and C. peltastes (smaller, domed) in their native habitat on Rodrigues Island in the late 1600s when accounts indicate the herds of tortoises were so large and dense that it was possible to walk for long distances on their backs without touching the ground (Leguat 1707).
Painting by Julian Pender Hume (from Griffiths et al. 2013).

ABSTRACT 

We provide a first checklist and review of all recognized taxa of the world’s extinct Pleistocene and Holocene (Quaternary) turtles and tortoises that existed during the early rise and global expansion of humanity, and most likely went extinct through a combination of earlier hominin (e.g., Homo erectus, H. neanderthalensis) and later human (H. sapiens) exploitation, as well as being affected by concurrent global or regional climatic and habitat changes. This checklist complements the broader listing of all modern and extant turtles and tortoises by the Turtle Taxonomy Working Group (2014). We provide a comprehensive listing of taxonomy, names, synonymies, and stratigraphic distribution of all chelonian taxa that have gone extinct from approximately the boundary between the Late Pliocene and Early Pleistocene, ca. 2.6 million years ago, up through 1500 AD, at the beginning of modern times. We also provide details on modern turtle and tortoise taxa that have gone extinct since 1500 AD. This checklist currently includes 100 fossil turtle and tortoise taxa, including 84 named and apparently distinct species, and 16 additional taxa that appear to  represent additional valid species, but are only identified to genus or family. Modern extinct turtles and tortoises include 8 species, 3 subspecies, and 1 unnamed taxon, for 12 taxa. Of the extinct fossil taxa, terrestrial tortoises of the family Testudinidae (including many large-bodied island forms) are the most numerous, with 60 taxa. When the numbers for fossil tortoises are combined with the 61 modern (living and extinct) species of tortoises, of the 121 tortoise species that have existed at some point since the beginning of the Pleistocene, 69 (57.0%) have gone extinct. This likely reflects the high vulnerability of these large and slow terrestrial (often insular) species primarily to human exploitation. The other large-bodied terrestrial turtles, the giant horned turtles of the family Meiolaniidae, with 7 taxa (also often insular), all went extinct by the Late Holocene while also exploited by humans. The total global diversity of turtles and tortoises that has existed during the history of hominin utilization of chelonians, and that are currently recognized as distinct and included on our two checklists, consists of 336 modern species and 100 extinct Pleistocene and Holocene taxa, for a total of 436 chelonian species. Of these, 109 species (25.0%) and 112 total taxa are estimated to have gone extinct since the beginning of the Pleistocene. The chelonian diversity and its patterns of extinctions during the Quaternary inform our understanding of the impacts of the history of human exploitation of turtles and the effects of climate change, and their relevance to current and future patterns.

Key Words: Reptilia, Testudines, turtle, tortoise, chelonian, taxonomy, distribution, extinction, fossils, paleontology, archaeology, humanity, hominin, exploitation, chelonophagy, megafauna, island refugia, climate change, Pliocene, Pleistocene, Holocene, Anthropocene, Quaternary


Anders G.J. Rhodin, Scott Thomson, Georgios L. Georgalis, Hans-Volker Karl, Igor G. Danilov, Akio Takahashi, Marcelo S. de la Fuente, Jason R. Bourque, Massimo Delfino, Roger Bour, John B. Iverson, H. Bradley Shaffer and Peter Paul van Dijk. 2015. Turtles and Tortoises of the World during the Rise and Global Spread of Humanity: First Checklist and Review of Extinct Pleistocene and Holocene Chelonians. In: Rhodin, A.G.J., Pritchard, P.C.H., van Dijk, P.P., Saumure, R.A., Buhlmann, K.A., Iverson, J.B., and Mittermeier, R.A. (Eds.). Conservation Biology of Freshwater Turtles and Tortoises: A Compilation Project of the IUCN/SSC Tortoise and Freshwater Turtle Specialist GroupChelonian Research Monographs. 5(8):1-66. DOI: dx.doi.org/10.3854/crm.5.000e.fossil.checklist.v1.2015
http://www.iucn-tftsg.org/recently-extinct-turtles-of-the-world/

Griffiths, O., Andre, A., and Meunier, A. 2013. Tortoise Breeding and ‘Re-Wilding’ on Rodrigues Island. In: Castellano, C.M., Rhodin, A.G.J., Ogle, M., Mittermeier, R.A., Randriamahazo, H., Hudson, R., and Lewis, R.E. (Eds.). Turtles on the Brink in Madagascar: Proceedings of Two Workshops on the Status, Conservation, and Biology of Malagasy Tortoises and Freshwater Turtles. Chelonian Research Monographs. 6:171–177.
http://www.chelonian.org/wp-content/uploads/file/CRM%206/28-Griffiths&al.pdf