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a | |
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prody.apps |
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prody.apps.evol_apps.evol_coevol |
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prody.apps.evol_apps.evol_conserv |
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prody.apps.evol_apps.evol_fetch |
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prody.apps.evol_apps.evol_filter |
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prody.apps.evol_apps.evol_merge |
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prody.apps.evol_apps.evol_occupancy |
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prody.apps.evol_apps.evol_rankorder |
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prody.apps.evol_apps.evol_refine |
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prody.apps.evol_apps.evol_search |
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prody.apps.prody_apps.prody_align |
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prody.apps.prody_apps.prody_anm |
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prody.apps.prody_apps.prody_biomol |
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prody.apps.prody_apps.prody_blast |
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prody.apps.prody_apps.prody_catdcd |
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prody.apps.prody_apps.prody_contacts |
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prody.apps.prody_apps.prody_fetch |
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prody.apps.prody_apps.prody_gnm |
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prody.apps.prody_apps.prody_pca |
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prody.apps.prody_apps.prody_select |
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prody.atomic |
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prody.atomic.acceptor |
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prody.atomic.angle |
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prody.atomic.atom |
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prody.atomic.atomgroup |
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prody.atomic.atomic |
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prody.atomic.atommap |
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prody.atomic.bond |
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prody.atomic.chain |
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prody.atomic.crossterm |
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prody.atomic.dihedral |
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prody.atomic.donor |
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prody.atomic.fields |
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prody.atomic.flags |
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prody.atomic.functions |
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prody.atomic.hierview |
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prody.atomic.improper |
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prody.atomic.nbexclusion |
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prody.atomic.pointer |
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prody.atomic.residue |
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prody.atomic.segment |
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prody.atomic.select |
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prody.atomic.selection |
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prody.atomic.subset |
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c | |
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prody.chromatin |
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prody.chromatin.cluster |
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prody.chromatin.functions |
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prody.chromatin.hic |
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prody.chromatin.norm |
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prody.chromatin.straw |
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prody.compounds |
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prody.compounds.bird |
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prody.compounds.ccd |
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prody.compounds.functions |
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prody.compounds.pdbligands |
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d | |
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prody.database |
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prody.database.cath |
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prody.database.dali |
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prody.database.goa |
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prody.database.pfam |
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prody.database.quartataweb |
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prody.database.uniprot |
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prody.domain_decomposition |
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prody.domain_decomposition.spectrus |
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prody.dynamics |
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prody.dynamics.adaptive |
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prody.dynamics.analysis |
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prody.dynamics.anm |
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prody.dynamics.compare |
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prody.dynamics.editing |
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prody.dynamics.essa |
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prody.dynamics.exanm |
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prody.dynamics.exgnm |
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prody.dynamics.functions |
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prody.dynamics.gamma |
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prody.dynamics.gnm |
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prody.dynamics.heatmapper |
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prody.dynamics.imanm |
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prody.dynamics.mechstiff |
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prody.dynamics.mode |
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prody.dynamics.modeset |
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prody.dynamics.nma |
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prody.dynamics.nmdfile |
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prody.dynamics.pca |
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prody.dynamics.perturb |
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prody.dynamics.plotting |
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prody.dynamics.rtb |
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prody.dynamics.sampling |
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prody.dynamics.signature |
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prody.dynamics.vmdfile |
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e | |
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prody.ensemble |
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prody.ensemble.conformation |
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prody.ensemble.ensemble |
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prody.ensemble.functions |
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prody.ensemble.pdbensemble |
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k | |
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prody.kdtree |
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prody.kdtree.kdtree |
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m | |
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prody.measure |
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prody.measure.contacts |
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prody.measure.measure |
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prody.measure.transform |
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p | |
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prody |
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prody.proteins |
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prody.proteins.blastpdb |
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prody.proteins.ciffile |
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prody.proteins.compare |
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prody.proteins.dssp |
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prody.proteins.emdfile |
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prody.proteins.functions |
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prody.proteins.header |
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prody.proteins.localpdb |
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prody.proteins.pdbclusters |
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prody.proteins.pdbfile |
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prody.proteins.starfile |
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prody.proteins.stride |
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prody.proteins.wwpdb |
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| | |
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s | |
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prody.sequence |
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prody.sequence.analysis |
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prody.sequence.msa |
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prody.sequence.msafile |
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prody.sequence.plotting |
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prody.sequence.sequence |
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t | |
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prody.trajectory |
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prody.trajectory.dcdfile |
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prody.trajectory.frame |
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prody.trajectory.psffile |
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prody.trajectory.trajbase |
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prody.trajectory.trajectory |
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prody.trajectory.trajfile |
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| | |
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u | |
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prody.utilities |
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prody.utilities.catchall |
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prody.utilities.checkers |
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prody.utilities.doctools |
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prody.utilities.drawtools |
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prody.utilities.eigtools |
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prody.utilities.laptools |
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prody.utilities.logger |
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prody.utilities.misctools |
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prody.utilities.pathtools |
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prody.utilities.seqtools |
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prody.utilities.settings |
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prody.utilities.TreeConstruction |
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