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v2.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.
Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments Bioinformatics 2011 27(11):1575-1577.
Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics Bioinformatics 2014 30(18):2681-2683.
This module defines classes for handling trajectory files in DCD format.
DCDFile parseDCD() writeDCD()
DCDFile
parseDCD()
writeDCD()
parsePSF()
Trajectory
Frame
Following examples show how to use trajectory classes and functions:
Trajectory Analysis Trajectory Analysis II Essential Dynamics Analysis