Conservation Application
Calculate conservation in an MSA using Shannon entropy.
-
evol_conserv(msa, **kwargs)[source]
Analyze conservation using Shannon entropy.
| Parameters: | msa – refined MSA file |
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Calculation Options
| Parameters: |
- ambiguity (bool) – treat amino acids characters B, Z, J, and X as non-
ambiguous, default is
True
- omitgaps (bool) – do not omit gap characters, default is
True
|
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Output Options
| Parameters: |
- prefix (str) – output filename prefix, default is msa filename with
_conserv suffix
- numformat (str) – number output format, default is
'%12g'
|
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