Atomic Base

This module defines base class Atomic that all other atomic classes are derived from.

class Atomic

Base class for all atomic classes that can be used for type checking.

copy()

Returns a copy of atoms (and atomic data) in an AtomGroup instance.

getSequence(**kwargs)

Returns one-letter sequence string for amino acids. When allres keyword argument is True, sequence will include all residues (e.g. water molecules) in the chain and X will be used for non-standard residue names.

getTitle()

Returns title of the instance.

select(selstr, **kwargs)

Returns atoms matching selstr criteria. See select module documentation for details and usage examples.

toAtomGroup()

Returns a copy of atoms (and atomic data) in an AtomGroup instance.

toTEMPyAtoms()

Returns a BioPy.PDB Atom or Structure object as appropriate

toTEMPyStructure()

Returns a BioPy.PDB Atom or Structure object as appropriate