First time users
The programs distributed from this site are free open source software. You can download them from the following pages:
Carma
Analysis of molecular dynamics trajectories.
grcarma
A graphical user interface for the program carma.
Queen of spades
Stochastic molecular replacement.
GraphEnt
Maximum entropy crystallographic maps.
Pepinsky's Machine
Teaching aid for 2D crystallographic Fourier transforms.
Good-Turing
Convergence of molecular dynamics trajectories.
plot and other programs
Including spherical harmonics, mcps and hp48.
Fast lane
Since you know what you are doing, double-click on the images above, download the compressed tarball, extract, go straight to bin/ and see if it works for you (for graphent you will have to start the PGPLOT server and set an enviromental variable for X to work). If not: compile from source (and forget the autoconf niceties, you will have to type 'gcc' followed by 42 flags and options), become root, install, test, finish it off, tell them. If not, tell me.
Web services
Pinda
A pipeline for intraspecies duplication analysis.
GraphEnt
Maximum entropy protein electron density maps.
GitHub
The github page is here.