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Computational Biophysics Workshop - Urbana, April 17-21, 2017

Below are planned tutorials listed by workshop day. More TCBG tutorials are available here.

Monday, April 17

• NAMD Tutorial
• Membrane Proteins Tutorial
• Molecular Dynamics Flexible Fitting (MDFF)

Tuesday, April 18

• QwikMD Tutorial
• Using VMD
• VMD Images and Movies Tutorial
• Structure Check
• Timeline: a VMD Plugin for Trajectory Analysis

Wednesday, April 19

• Free Energy Tutorials

Thursday, April 20

• Parameterizing Small Molecules Using Force Field Toolkit (ffTK)
• Parameterizing a Novel Residue
• Topology File Tutorial

Friday, April 21

• Modeling Nanopores for Sequencing DNA
• A Practical Guide to MD Simulations of DNA Origami
• Sharing Results with MDShowcase
• Lattice Microbes and pyLM
• Installing LM in the Amazon Instances
• Participants may select other tutorials of interest.