Computational Biophysics Workshop - Talca, Nov. 23-26, 2009
TCB Hands-on Workshop in Urbana
Tutorials
Below is a list of the tutorials used at the summer school.
Please
click here to see a page with the updated versions of these tutorials.
- Using VMD
An introduction to VMD and its capabilities
- NAMD Tutorial
An introduction to NAMD and its capabilities
- Simulation of Water Permeation Through
Nanotubes
Investigates the permeation of water through nanotubes, as a
model for transmembrane permeation of substrates through
channels
- A Tutorial on Alchemical Free Energy Perturbation
Calculations in NAMD
Discusses setting up the system and calculations needed for
free energy calculations of alchemical transformations
within NAMD