Computational Biophysics Workshop - Pittsburgh, October 12 - 15, 2020
Tutorials
Below is a list of the TCBG tutorials available at the workshop. See the laptop setup page for needed files.
- Using VMD
- NAMD Tutorial
- QwikMD Tutorial
- Membrane Proteins Tutorial
- A Tutorial on Alchemical Free Energy Perturbation Calculations in NAMD
- Protein:ligand Standard Binding Free Energies: A Tutorial for Alchemical and Geometrical Transformations
- Parameterizing Small Molecules Using Force Field Toolkit (ffTK)
- String Method with Swarms of Trajectories: A Tutorial for Free-energy Calculations along a Minimum-action Path
- Performing Metadynamics Simulations Using NAMD
- Constant pH tutorial
- See also the main tutorial page
Advanced Tutorials
And here is a list of the tutorials being provided by the BTRC for Multiscale Modeling of Biological Systems:
- ProDy Tutorial
- NMWiz Tutorial
- ENM Analysis
- Ensemble Analysis
- Structure Analysis
- Trajectory Analysis
- Conformational Sampling
- Druggability Tutorial
- Evol Tutorial
- See also the main tutorial page
Note: participants may also download and get assistance with other tutorials from the TCBG tutorials website during the workshop.
