Lectures and Talks

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Below are lectures, talks, and other presentations given by TCB faculty and other group members in meetings and conferences locally and around the world.

Lectures & Talks 2004

Klaus Schulten    Laxmikant Kale    Emad Tajkhorshid    Zaida Luthey-Schulten    Alek Aksimentiev    Other TCB Members

Klaus Schulten

  • January 2009, Loyola University, Chicago, Illinois, Chemistry Seminar Series
    Lecture: "The Chemical Compass of Animal Magnetotaxis"

  • January 2009, University of Illinois at Urbana-Champaign, Micro and Nanotechnology Laboratory (MNTL), Seminar Series of the Center for Cellular Mechanics
    Lecture: "Discovery Through the Computational Microscope"

  • February 2009, Stanford, CA, Stanford University, OpenMM Workshop and Molecular Dynamics Symposium
    Lecture: "Biomolecular Modeling with VMD and NAMD Accelerated Through Graphics Processing Units"

  • February 2009, Chicago, IL, AAAS Annual Meeting
    Lecture: "The Computational Microscope"

  • March 2009, Juelich, Germany, Juelich Winter School 2009, Multiscale Simulation Methods in Molecular Sciences
    Lecture: "Application of Residue-Based Coarse Graining to Biomolecular Simulations"

  • March 2009, Munich, Germany, Workshop on Molecular Modelling on Supercomputers
    Lecture: "Structural Systems Biology"

  • March 2009, Bad Staffelstein, Germany, Light Harvesting Processes 2009
    Lecture: "Form-follows-Function Architecture of Purple Bacterial Light Harvesting Systems"

  • April 2009, New Haven, CT, Yale University, Departments of Mechanical Engineering and Physics
    Lecture: "The Computational Microscope"
     
  • May 2009, La Jolla, CA, Burnham Institute for Medical Research
    Lecture: "The Computational Microscope"
     
  • May 2009, Berlin, Germany, Molecular Kinetics 2009
    Lecture: "Common Structural Transitions in 50 Microseconds of Explicit-solvent Simulations of Villin Headpiece Folding"
     
  • June 2009, Muenster, Germany, Molecular Cell Dynamics Symposium
    Lecture: "Single Molecule Experiments in Vitro and in Silico"
     
  • June 2009, Manchester, UK, University of Manchester, Manchester Interdisciplinary Biocentre, 2008/2009 MIB International Seminar Series
    Lecture: "The Computational Microscope"
     
  • June 2009, London, England, London Faraday Discussions
    Lecture: "Molecular Control of Ionic Conduction in Polymer Nanopores"
     
  • June 2009, Kyoto, Japan, International Symposium on "Reaction Dynamics of Many-Body Chemical Systems"
    Lecture: "The Quantum Biology of Animal Magnetoreception"
     
  • July 2009, Blaine, WA, Foundations of Molecular Modeling and Simulation Conference
    Lecture: "Large-size, Long-time, Molecular Dynamics Simulations on a Budget"

  • July 2009, Champaign, IL, iHotel and Conference Center, 'Hands-on' Workshop on Computational Biophysics
    Lecture: "Introduction to Protein Structure and Dynamics"
    Lecture: "Statistical Mechanics of Proteins"
     
  • August 2009, Champaign, IL, iHotel and Conference Center, 'Hands-on' Workshop on Computational Biophysics
    Lecture: "Introduction to Protein Structure and Dynamics"
    Lecture: "Statistical Mechanics of Proteins"
     
  • September 2009, Berlin, Germany, International Symposium on Protein-Cofactor Interactions of the Collaborative Research Center CRC-498
    Lecture: "Cryptochrome: Universal Magnetic Compass in Animal Navigation"

  • September 2009, University of Illinois at Urbana-Champaign, Beckman Institute 20th Anniversary Symposium, Computational Biology of the Cell - The Next Decade
    Lecture: "Molecular Assembly and Teamwork - Bridge Between Inanimate and Animate Matter"

  • October 2009, Urbana, IL, University of Illinois at Urbana-Champaign, Illinois Imaging Workshop
    Lecture: "The Computational Microscope Images Biomolecular Machines and Nanodevices"

  • October 2009, Heidelberg, Germany, Symposium at the Villa Bosch, Subcellular Microscopy and Probing
    Lecture: "Discovery of Subcellular Structures and Processes through the Computational Microscope"

  • October 2009, Frankfurt, Germany, University of Frankfurth, Frankfurt Institute of Advanced Studies
    Lecture: "Molecular Assembly and Teamwork - Bridge Between Inanimate and Animate Matter"

  • November 2009, Portland, OR, SC 2009, Computing for a Changing World
    Lecture: "Fighting Swine Flu through Computational Medicine"

  • December 2009, Clearwater, FL, 3rd International Conference on Mechanics of Biomaterials & Tissues
    Lecture: "Molecular Mechanics of Muscle Elasticity"

Laxmikant Kale

  • March 2009, Wadem, Germgany, Schloss Dagstuhl - Leibniz Center for Informatics, Dagstuhl Seminar 09191
    Lecture: "Object-based Over-Decomposition can enable powerful Fault Tolerance Schemes"

  • October 2009, Arlington, VA, Los Alamos National Laboratory 2009 National High Performance Computing Workshop on Resilience
    Lecture: "Scalable Fault Tolerance Schemes Using Adaptive Runtime Support"

Emad Tajkhorshid

  • January 2009, New Haven, CT, Yale University, Department of Physiology
    Lecture: "Dynamics of Active Transport Across Cellular Membranes at Full Atomic Resolution"

  • February 2009, Saint Simons, GA, Invited lecture at 49rd Sanibel Symposium 2009
    Lecture: "Dynamics of Active Transport Across Cellular Membranes at Full Atomic Resolution"
     
  • May 2009, Cagliari, Italy, International Workshop on From Structure to Function: Influx and Efflux Systems
    Lecture:"Visualizing the Art of Active Transport Across Cellular Membranes at Sub-angstrom Resolution"
     
  • June 2009, Bremen, Germany, University of Bremen, Summer School on Quantum and Classical Simulation of Biological Systems and Their Interaction with Technical Materials
    Lecture: "Dynamical View of Energy Coupling Mechanisms in Active Membrane Transporters"
     
  • June 2009, Bremen, Germany, University of Bremen, Summer School on Quantum and Classical Simulation of Biological Systems and Their Interaction with Technical Materials
    Lecture: "Molecular Dynamics Studies of Mechanisms of Permeation, Selectivity, and Gating in Membrane Channels"
     
  • July 2009, Boston, MA, XXII Congress of the International Society on Thrombosis and Haemostasis
    Lecture: "Dynamical View of Membrane Binding and Complex Formation of Human Tissue Factor and Factor VIIa"
     
  • July 2009, Champaign, IL, iHotel and Conference Center, 'Hands-on' Workshop on Computational Biophysics
    Lecture: "Parameters for Classical Force Fields"
    Lecture: "Simulating Membrane Channels"
     
  • August 2009, Champaign, IL, iHotel and Conference Center, 'Hands-on' Workshop on Computational Biophysics
    Lecture: "Parameters for Classical Force Fields"
    Lecture: "Simulating Membrane Channels"
     
  • September 2009, Kyoto, Japan, International Symposium on Innovative Nanoscience of Supermolecular Motor Proteins Working in Biomembranes
    Lecture: "Coupling of Protein Conformational Transitions and Vectorial Substrate Translocation in Membrane Transporters"
     
  • September 2009, Tokyo, Japan, Riken Institute
    Lecture: "Visualizing the Dynamics of Membrane Transport at Sub-Angstrom Resolution"
     
  • September 2009, Tokyo, Japan, University of Tokyo, Intelligent Molecular Laboratory
    Lecture: "Computational Studies of Membrane Proteins and Processes at Different Size and Time Scales"
     
  • September 2009, Urbana, IL, University of Illinois at Urbana-Champaign, Beckman Institute, Symposium on Computational Biology of the Cell - the Next Decade
    Lecture: "Simulating the Art of Active Transport Across the Cellular Membrane"
     
  • October 2009, New York, NY, Weill Medical College of Cornell University, Department of Physiology and Biophysics, Institute for Computational Biomedicine
    Lecture: "Unraveling the Dynamical Basis of Membrane Transporter Function at Sub-Angstrom Resolution"

Zaida Luthey-Schulten

  • May 2009, Ringberg, Germany, Max-Planck Institute (Biochemistry, Baumeister) at Ringberg
    Lecture: "Long Time-scale Simulations of Whole Cells: Effects of Spatial Heterogeneity and Molecular Crowding"

  • June 2009, Kyoto, Japan, Symposium - Reaction Dynamics in Many Body Chemical Systems
    Lecture: "Dynamical Networks in Protein:RNA Complexes"

  • July 2009, Urbana, IL, University of Illinois at Urbana-Champaign, NSF Center for Physics of Living Cells Summer School
    Lecture: "Introduction to Sequence Analysis"

  • August 2009, Chicago, IL, DOE Workshop on Opportunities in Extreme Scale Computing in Biology
    Lecture: "Simulations of Supramolecular Assemblies and Cellular Processes"

Alek Aksimentiev

  • January 2009, Chicago, IL, University of Illinois at Chicago, Department of Chemistry, Colloquium
    Lecture: "Sequencing a DNA Molecule Using a Nanopore"
     
  • March 2009, Pittsburgh, PA, American Physical Society Meeting
    Lecture: "Molecular Mechanics of DNA Stretching, Electrophoresis and Condensation"
     
  • March 2009, Washington,  DC, National Science Foundation Panel on Graduate Education at the Interface of Physics and Biology
    Lecture: "Graduate Education at UIUC"
     
  • April 2009, San Diego, CA, Advanced Sequencing Technology Development Meeting
    Lecture: "Molecular Dynamics Simulations of Nanopore Platforms for Sequencing DNA"
     
  • June 2009, Bremen, Germany, 436th WE Heraeus Seminar: Biosensing with Channels
    Lecture: "Deciphering DNA Structure and Sequence from Ionic Current"
     
  • September 2009, University of Illinois at Urbana-Champaign, Beckman Institute 20th Anniversary Symposium, Computational Biology of the Cell - The Next Decade
    Lecture: "Molecular Modeling in Nanobiotechnology"

  • October 2009, Muncie, IN, Ball State University, Department of Physics, Colloquium
    Lecture: "Toward Sequencing DNA Using Nanopores"
     
  • October 2009, Urbana, IL, University of Illinois, Department of Physics, Colloquium
    Lecture: "Physical Approaches to Sequencing DNA"
     
  • November 2009, Seattle, WA, University of Washington, Department of Physics, Colloquium
    Lecture: "Physical Approaches to Sequencing DNA"
     
  • November 2009, Paris, France, French & American Young Engineering Scientists Symposium
    Lecture: "Molecular Modeling in Nanobiotechnology: The Case Study of a DNA Sequencing Device"

Other TCB members (includes meetings attended and poster sessions)

  • February 2009, Urbana, IL, University of Illinois, Center for the Physics of Living Cells, Post-doc and Graduate Student Symposium
    Lecture: "Single-molecule Studies of the Ribosome In Vitro and In Silico" (Leonardo Trabuco)

  • February-March 2009, Boston, MA, Biophysical Society 53rd Annual Meeting
    Poster: "Coarse-grained Simulations and AFM Nanoindentation Experiments on a Hepatitis B Virus Capsid" (Anton Arkhipov, Wouter H. Roos, Gijs J. L. Wuite, Klaus Schulten)
    Poster: "Microsecond-timescale Explicit Solvent Molecular Dynamics Simulation of Protein Folding" (Peter Freddolino, Feng Liu, Sanghyun Park, Martin Gruebele, Benoit Roux, Klaus Schulten)
    Poster: "Atomic Scale Description of Ionic Behavior in Polymer Nanopores" (Eduardo R.Cruz-Chu, Klaus Schulten)
    Poster: "Calculation of Gating Charge in Kv1.2 Potassium Channel" (Fatemeh Khalili-Araghi, V. Jogini, V. Yarov-Yarovoy, Emad Tajkhorshid, Benoit Roux, Klaus Schulten)
    Lecture: "Simulations of Membrane Sculpting by N-BAR Domains" (Ying Yin, Anton Arkhipov and Klaus Schulten)
    Presentation: "The Computational Microscope" (Anton Arkhipov, Ying Yin, James Gumbart)
    Lecture: "Regulation of the Protein-Conducting Channel by a Bound Ribosome" (James Gumbart)

  • March 2009, Urbana, IL, Beckman Institute for Advanced Science and Technology, Beckman Institute Open House 2009
    Lecture: "A Journey Through Molecules of Life with Your Friendly Neighborhood Biophysicist" (Melih Sener)

  • April 2009, Urbana, IL, Beckman Institute for Advanced Science and Technology, Graduate Student Seminar Series
    Lecture: "Molecular Dynamics Simulations of Villin Headpiece Folding" (Peter Freddolino)
    Lecture: "Membrane Sculpting by BAR Domain Proteins" (Ying Yin)
     
  • September 2009, Urbana, IL, Beckman Institute for Advanced Science and Technology, Graduate Student Seminar Series
    Lecture: "Curvature-Inducing Properties of Light-Harvesting Complex II (LH2)" (Danielle Chandler)

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