Lectures and Talks
2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | pre-2000
Below are lectures, talks, and other presentations given by TCB faculty and other group members in meetings and conferences locally and around the world.
Klaus Schulten Laxmikant Kale Zaida Luthey-Schulten Emad Tajkhorshid Alek Aksimentiev Other TCB Members
- January 2008, Steamboat Springs, CO, Keystone Symposia J1 2008 -
Frontiers of Structural Biology
Lecture: "The Computational Microscope"
- February 2008, Long Beach, CA, 2008, 52nd Biophysical Society Annual
Meeting & 16th IUPAB Intl Congress
Lecture: "Observing Protein Translocation in SecY and a SecY-Ribosome Complex through Molecular Dynamics" - April 2008, St. Louis, MO, Washington University in St. Louis, Department of Biochemistry and Molecular Biophysics
Lecture: "How Directional Translocation is Regulated by a DNA Helicase Motor" - April 2008, Indianapolis, IN, Eli Lily, Global Drug Discovery Group
Lecture: "Advances in Molecular Dynamics Simulations" - May 2008, University of Illinois, Urbana, 2008 NCSA Private Sector Program Annual
Meeting
Lecture: "The Computational Microscope" (video available here in quicktime or flash) - May 2008, Physics Department, University of Illinois at Urbana-Champaign, UCS,
2008
Lecture: "Brownian Ratchet Seen in Action: How Directional Translocation is Regulated by a DNA Helicase Motor" - June 2008, Barcelona, Spain, Barcelona Supercomputing Center, Grand Challenges in Computational Biology
Lecture: "The Computational Microscope" - June 2008, Sitges, Spain, XXI Sitges Conference on Statistical Mechanics
Lecture: "Coarse Graining in Biomolecular Simulations" - June 2008, Ascona, Switzerland, 2008 President’s Meeting of the International Society of Quantum Biology and Pharmacology (ISQBP)
Lecture: "Molecular Dynamics Simulations Beyond Microsecond, Beyond Million Atoms, Beyond Present Force Fields" - July 2008, Saxtons River, Vermont, FASEB, Molecular Biophysics of Cellular Membranes
Lecture: "Computational Modeling of Proteins Sensing and Controlling Cellular Membrane Mechanics" - August 2008, Santa Fe, New Mexico, Workshop on Nuclear Pore Complex: Biology, Physics and Nanotechnology
Lecture: "Gating Mechanism of the Nuclear Pore Complex Studied Through Molecular Dynamics" - September 2008, Lansing, MIchigan, Michigan State University, Quantitative Biology & Modeling Science at the Edge series
Lecture: "Molecular Dynamics Simulations Beyond Microsecond, Beyond Million Atoms, Beyond Present Force Fields" - September 2008, Arizona State University, Tempe, AZ, Erying Lectures in Chemistry and Biochemistry
Lecture: "Computational Microscopy of the Living Cell" - September 2008, University of Arizona, Tempe, AZ, Erying Lectures in Chemistry and Biochemistry
Lecture: "Physics of Photosynthesis in Purple Bacteria" - September 2008, University of Illinois at Urbana-Champaign, Siebel Center, UIUC SIAM Student Chapter Colloquia
Lecture: "Advanced Computing in Biology and Bioengineering" - October 2008, Atlanta, GA, Georgia Tech, International Launch Conference, Frontiers in Multi-Scale Systems Biology
Lecture: "Cellular Systems and Processes viewed through Hybrid Methods of Observation and Modeling" - November 2008, University of Illinois at Urbana-Champaign, Physics of Living Cells, Physics Frontier Center
Lecture: "Physical Mechanism of Protein Elongation In The Ribosome" - November 2008, Urbana, IL, Dial Club
Lecture: "The Animal Compass" - December 2008, 161 Noyes, UIUC Chapter, National Organization for the Professional Advancement of Black Chemists and Chemical Engineers (NOBCChE)
Lecture: "Making Discoveries in Biology with the Computational Microscope" - December 2008, University of Houston, Houston, TX, NCMI Workshop on Single Particle Reconstruction
Lecture: "Cellular Systems and Processes viewed through Hybrid Methods of Observation and Modeling" - December 2008, University of Maryland Biotechnology Institute, Rockville, MD, CARB's (Center for Advanced Research in Biotechnology) External Speaker Series
Lecture: "Cellular Systems and Processes Viewed through Hybrid Methods of Observation and Modeling"
- July 2008, Seattle, WA, Scientific Discovery through Advanced Computing (SciDAC) 2008
Lecture: "Some Essential Techniques for Developing Efficient Petascale Applications" - August 2008, Urbana, IL, University of Illinois at Urbana-Champaign, Universal Parallel Computing Research Center
Lecture: "Simplifying Parallel Programming with Incomplete Parallel Languages"
- February 2008, Washington, DC, U. S. Department of Energy, GTL
Lecture: "Molecular Signatures of the Past: Coevolution of rRNA and rProteins" - February 2008, Urbana, IL, University of Illinois at Urbana-Champaign, Biochemistry Seminar
Lecture: "Dynamics of Recognition in Protein/RNA Complexes" - June 2008, Munich, Germany, Ludwig Maximillian University Munich, Applied Physics Institute
Lecture: "Dynamics of Recognition in Protein/RNA Complexes: Evolution of Translation" - June 2008, Munich, Germany, Technical University Munich, Chemistry Department
Lecture: "Dynamics of Recognition in Protein/RNA Complexes" - August 2008, Philadelphia, PA, ACS Meeting, Computional Chemistry Session
Lecture: "Dynamics of Recognition in Protein/RNA Complexes:Evolution of Translation" - September 2008, Annecy, France, AARS Meeting
Lecture: "Migration tRNA from GluRs to EF-Tu" - September 2008, Phoenix, AZ, Arizona State University, Department of Chemistry Biochemistry
Lecture: "Dynamics of Recognition and Signaling in Protein/RNA Complexes" - October 2008, Indianapolis, IN, Indiana University School of Medicine, Center for Computational Biology and Bioinformatics
Lecture: "On the Evolution of Translation" - November 2008, Urbana, IL, University of Illinois at Urbana-Champaign, Physics Frontier Center Symposium
Lecture: "Towards Lattice Simulations of in vivo Translation" - December 2008, Bowling Green, OH, Bowling Green State University
Lecture: "On the Evolution of Translation: Dynamics of Recognition in Protein/RNA Complexes"
- January 2008, Urbana, IL, University of Illinois at Urbana-Champaign,
Departmental Seminar
Lecture: "Membrane Transport at sub-Angstrom Resolution" - March 2008, Ventura, CA, Gordon Research Conference – Ligand
Recognition and Molecular Gating
Lecture: "Dynamics of Substrate Binding, Gating, and Energy Coupling in Membrane Transporters" - March 2008, Cleveland, OH, Case Western Reserve University
Lecture: "A Dynamical View of Membrane Transport at Full Atomic Resolution: Molecular Dynamics Simulation of Membrane Transporters" - March 2008, Sacramento, CA, University of California Davis
Lecture: "A Dynamical View of Membrane Transport at Full Atomic Resolution: Molecular Dynamics Simulation of Membrane Transporters " - May 2008, Ashburn, VA, HHMI Janelia Farm Research Campus, Conference on Force-Gated Ion Channels: From Structure to Sensation
Lecture: "Ion Binding and Channel Opening of Acid Sensing Ion Channel-1" - May 2008, Calgera, Alberta, Canada, University of Calgary
Lecture: "Visualizing the Art of Active Transport Across Cellular Membranes at Full Atomic Resolution" - July 2008, Telluride, CO, Telluride Science Research Center, Protein Electrostatic Workshop
Lecture: "A Dynamical View of Membrane Transporters - Electrostatic Aspect of Transport" - September 2008, New York, NY, New York University
Lecture: "Visualizing the Art of Active Transport Across Cellular Membranes at Sub-Angstrom Resolution" - October 2008, Newark, DE, University of Delaware, Delaware Membrane Protein Symposium
Lecture: "Dynamics of Active Transport Across Cellular Membranes at Full Atomic Resolution" - October 2008, Chicago, IL, University of Illinois at Chicago, Department of Pharmacology
Lecture: "An Atomic-Resolution View of Membrane Binding and Activation of Blood Coagulation Factors"
- April 2008, Columbia, MO, University of Missouri at Columbia, Department of
Physics and Astronomy, O. M. Stewart Colloquia
Lecture: "Solid-state Nanopores: Versatile Instruments for Nanotechnology and Life Sciences" - April 2008, Urbana, IL, University of Illinois at Urbana-Champaign, Department of Mechanical Engineering
Lecture: "Micromechanics of DNA" - May 2008, Grenoble, France, INRIA, SeMoVi Seminar
Lecture: "Modeling Silicon Nanopores for Detection and Manipulation of Single Biomolecule" - July 2008, Yorktown Heights, NY, IBM T. J. Watson Research Center
Lecture: "Modeling Silicon Nanopores for Sequencing DNA" - September 2008, Liege,Belgium, Fourth Focused Workshop on Electronic Recognition of Biomolecules
Lecture: "Effective Force, Electro-Osmotic Flow and Charge Inversion in a Solid-State Nanopore" - September 2008, Urbana, IL, University of Illinois at Urbana-Champaign, NSF Center for Advanced Materials for Water Purification
Lecture: "Nanomachines: State of the Art, Perspectives and Challenges" - October 2008, Yokohoma, Japan, Yokohama City University, Department of Supramolecular Biology
Lecture: "Molecular Dynamics Simulations of DNA Micromechanics"
Other TCB members (includes meetings attended and poster sessions)
- February 2008, Long Beach, CA, Biophysical Society 52nd Annual Meeting
Poster: "Ion Binding Sites of Acid Sensing Ion Channel-1" (Saher Afshan Shaikh, Emad Tajkhorshid)
Poster: "Multiscale Simulations of Membrane Tubulation by BAR Domains" (Ying Yin, Anton Arkhipov, Klaus Schulten)
Poster: "Where is the bc1-complex Located in the Photosynthetic Chromatophore?" (Chris Harrison, Danielle Chandler, Jen Hsin, James Gumbart, Klaus Schulten)
Poster: "The Allosteric Role of the Ca+2 switch in Adhesion and Elasticity of C-Cadherin" (Marcos Sotomayor, Klaus Schulten)
Poster: "Rhodobacter sphaeroides LH1-RC-PufX Dimer Curves Chromatophore Membranes" (Jen Hsin, James C. Gumbart, Danielle E. Chandler, Christopher Harrison, Pu Qian, Per A. Bullough, C. Neil Hunter, Klaus Schulten)
Poster: "FG repeatStructure of the Brush-like Mesh Formed by the FG-repeat Nucleoporin Nsp1" (Lingling Miao, Timothy A. Isgro, Klaus Schulten)
Poster: "Simulation of Protein Translocation Inside the Central Channel of Bacterial Flagellum" (Zhongzhou Chen, Peter Freddolino, Anton Arkhipov, Klaus Schulten)
Poster: "Complex Formation-Activation of Coagulation Factors at the Negatively Charged Membrane Surface" (Y. Zenmei Ohkubo, Zhijian Huang, Emad Tajkhorshid)
Poster: "Dissecting Lipid- and Protein-Mediated Exchange of Gas Molecules across Biological Membranes" (Yi Wang, Y. Zenmei Ohkubo, Emad Tajkhorshid)
Poster: "Extracellular Gating Mechanism of the Glutamate Transporter" (Zhijian Huang, Emad Tajkhorshid)
Poster: "The Maturation of Human High-Density Lipoprotein Particles: Conversion of Disks to Spheres" (Amy Y. Shih, Stephen G. Sligar, Klaus Schulten)
Poster: "The roles of the Pore Ring and the Plug in the SecY Protein-conducting Channel" (James Gumbart, Klaus Schulten)
Lecture (platform presentation): "Molecular Mechanism of Fibrin Clot Elasticity" (Eric Lee)
Lecture: "Gating charge calculations of the Kv1.2 potassium channel" (Fatemeh Khalili-Araghi)
Lecture: "Electrostatic Funneling of Nucleotide Binding in the Mitochondrial ADP/ATP Carrier" (Yi Wang)
Lecture: "Agonist Binding and Allostery in NR3A Receptors" (Chris Harrison, Klaus Schulten)
Lecture: "Merging Data from Different Resolutions to Reveal Biomolecular Function" (Elizabeth Villa)
Lecture: "4Pi Microscopy for Fluorescence Microphotolysis and Correlation Spectroscopy" (Anton Arkhipov, Klaus Schulten) - March 2008, Macomb, IL, Western Illinois University Physics Department (James Gumbart)
Lecture: "Bringing Physics to Life: Biological Insights from Computer Simulations" - March 2008, New Orleans, LA, American Physical Society March Meeting
Lecture: "Diffusion Limited Optical Effects in Single Walled Carbon Nanotubes" (Aruna Rajan) - March 2008, Telluride, CO, TSRC Workshop on Mechanistic Analysis of Biological Systems with Novel Computational Models
Lecture: "Maturation of High-density Lipoprotein Particles" (Amy Y. Shih) - March 2008, Lake Tahoe, CA, 4th International Conference on Structural Analysis of Supramolecular Assemblies by Hybrid Methods
Poster: "Merging Data from Cryo-EM and X-ray Crystallography to Reveal Biomolecular Function" (Elizabeth Villa, Leo Trabuco, Kakoli Mitra, Jayati Sengupta, Joachim Frank, Klaus Schulten) - April 2008, Ithaca, NY, Cornell University, Department of Theoretical and Applied Mechanics
Lecture: "Structural Dynamics of Protein-DNA Complexes Revealed by Multiscale Simulations" - August, 2008, Osaka, Japan, XXI Congress of the International Union of Crystallography, Interface between Cryo-EM and Crystallography Microsymposium
Lecture: "Merging Data from Different Resolutions to Reveal Biomolecular Function" (Elizabeth Villa) - August 2008, Philadelphia, PA, University of Pennsylvania, Center of Molecular Modeling, Workshop on QM/MM Simulations
Lecture: "QM/MM in NAMD" (Chris Harrison) - September 2008, Lausanne, Switzerland, Centre Européen de Calcul Atomique et Moléculaire Workshop, Membrane Protein Assembly: Theory and Experiment
Lecture: "Bending of the Chromatophore Membrane Through Core Complex Dimerization: A Molecular Dynamics and Electron Microscopy Investigation" (Jen Hsin) - September 2008, San Francisco, CA, American Society for Cell Biology
Lecture: "Ribosome-induced Changes in EF-Tu Conformation: Mechanism of GTP Hydrolysis" (Elizabeth Villa) - September 2008, Cold Spring Harbor, NY, Cold Spring Harbor Laboratory, CSHL Meeting on Translational Control
Lecture: "Ribosome-induced Changes in EF-Tu Conformation: Mechanism of GTP Hydrolysis" (Elizabeth Villa) - October 2008, Urbana, IL, University of Illinois at Urbana-Champaign, Beckman Institute Student Seminar Series
Lecture: "Ribosome-induced Changes in EF-Tu Conformation Control GTP Hydrolysis" (Leonardo Trabuco) - November 2008, Urbana, IL, University of Illinois at Urbana-Champaign, Cell and Molecular Biology & Molecular Biophysics Training Grants - 21st Annual Research Symposium
Lecture: "Merging Data from Cryo-EM and X-ray Crystallography to Reveal Biomolecular Function" (Leonardo Trabuco)
