Cannot run OPC solvated system on NAMD3

From: Sara Omar (sara.ibrahim.omar_at_gmail.com)
Date: Wed May 19 2021 - 23:24:59 CDT

Greetings,

When I try to minimize my system composed of a protein complex solvated in
OPC water (Amber parameters - and I set watermodel to tip4 and rigidatoms
in the config file), I get 'Nan' values in the output when running on NAMD3
CUDA version.
I do not get this issue when running the system on NAMD2.14 and the system
gets minimized successfully.

Any suggestions?

Kindest regards,
Sara

This archive was generated by hypermail 2.1.6 : Fri Dec 31 2021 - 23:17:11 CST