MPI2007 license: | 13 | Test date: | Jul-2009 |
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Test sponsor: | Intel Corporation | Hardware Availability: | Jun-2009 |
Tested by: | Pavel Shelepugin | Software Availability: | Jun-2009 |
Benchmark | Base | Peak | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ranks | Seconds | Ratio | Seconds | Ratio | Seconds | Ratio | Ranks | Seconds | Ratio | Seconds | Ratio | Seconds | Ratio | |
Results appear in the order in which they were run. Bold underlined text indicates a median measurement. | ||||||||||||||
104.milc | 256 | 46.0 | 34.0 | 44.9 | 34.8 | |||||||||
107.leslie3d | 256 | 142 | 36.8 | 142 | 36.8 | |||||||||
113.GemsFDTD | 256 | 333 | 19.0 | 322 | 19.6 | |||||||||
115.fds4 | 256 | 65.1 | 30.0 | 63.8 | 30.6 | |||||||||
121.pop2 | 256 | 173 | 23.9 | 172 | 23.9 | |||||||||
122.tachyon | 256 | 100 | 27.9 | 99.6 | 28.1 | |||||||||
126.lammps | 256 | 149 | 19.6 | 149 | 19.6 | |||||||||
127.wrf2 | 256 | 116 | 67.4 | 117 | 66.4 | |||||||||
128.GAPgeofem | 256 | 48.7 | 42.4 | 48.6 | 42.5 | |||||||||
129.tera_tf | 256 | 98.7 | 28.1 | 98.5 | 28.1 | |||||||||
130.socorro | 256 | 95.4 | 40.0 | 95.6 | 39.9 | |||||||||
132.zeusmp2 | 256 | 78.4 | 39.6 | 78.9 | 39.3 | |||||||||
137.lu | 256 | 64.2 | 57.2 | 63.9 | 57.5 |
Hardware Summary | |
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Type of System: | Homogeneous |
Compute Node: | Endeavor Node |
Interconnect: | IB Switch |
File Server Node: | LFS |
Total Compute Nodes: | 32 |
Total Chips: | 64 |
Total Cores: | 256 |
Total Threads: | 256 |
Total Memory: | 768 GB |
Base Ranks Run: | 256 |
Minimum Peak Ranks: | -- |
Maximum Peak Ranks: | -- |
Software Summary | |
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C Compiler: | Intel C++ Compiler 11.1 for Linux |
C++ Compiler: | Intel C++ Compiler 11.1 for Linux |
Fortran Compiler: | Intel Fortran Compiler 11.1 for Linux |
Base Pointers: | 64-bit |
Peak Pointers: | 64-bit |
MPI Library: | Intel MPI Library 3.2 for Linux |
Other MPI Info: | None |
Pre-processors: | No |
Other Software: | None |
Hardware | |
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Number of nodes: | 32 |
Uses of the node: | compute |
Vendor: | Intel |
Model: | SR1600UR |
CPU Name: | Intel Xeon X5560 |
CPU(s) orderable: | 1-2 chips |
Chips enabled: | 2 |
Cores enabled: | 8 |
Cores per chip: | 4 |
Threads per core: | 1 |
CPU Characteristics: | Intel Turbo Boost Technology disabled, 6.4 GT/s QPI, Hyper-Threading disabled |
CPU MHz: | 2800 |
Primary Cache: | 32 KB I + 32 KB D on chip per core |
Secondary Cache: | 256 KB I+D on chip per core |
L3 Cache: | 8 MB I+D on chip per chip, 8 MB shared / 4 cores |
Other Cache: | None |
Memory: | 24 GB (RDIMM 6x4-GB DDR3-1333 MHz) |
Disk Subsystem: | Seagate 400 GB ST3400755SS |
Other Hardware: | None |
Adapter: | Mellanox MHQH29-XTC |
Number of Adapters: | 1 |
Slot Type: | PCIe x8 Gen2 |
Data Rate: | InfiniBand 4x QDR |
Ports Used: | 1 |
Interconnect Type: | InfiniBand |
Software | |
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Adapter: | Mellanox MHQH29-XTC |
Adapter Driver: | OFED 1.3.1 |
Adapter Firmware: | 2.6.000 |
Operating System: | Red Hat EL 5.2, kernel 2.6.18-128 |
Local File System: | Linux/ext2 |
Shared File System: | Lustre FS |
System State: | Multi-User |
Other Software: | PBS Pro 8.0 |
Hardware | |
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Number of nodes: | 8 |
Uses of the node: | fileserver |
Vendor: | Intel |
Model: | SR1560SF |
CPU Name: | Intel Xeon E5462 |
CPU(s) orderable: | 1-2 chips |
Chips enabled: | 2 |
Cores enabled: | 8 |
Cores per chip: | 4 |
Threads per core: | 1 |
CPU Characteristics: | 1600 MHz FSB |
CPU MHz: | 2800 |
Primary Cache: | 32 KB I + 32 KB D on chip per core |
Secondary Cache: | 12 MB I+D on chip per chip, 6 MB shared / 2 cores |
L3 Cache: | None |
Other Cache: | None |
Memory: | 16 GB DDR2 16x1-GB 667 MHz |
Disk Subsystem: | Seagate 250 GB |
Other Hardware: | connected to DDN storage (see General Notes) |
Adapter: | Mellanox MHGH28-XTC |
Number of Adapters: | 1 |
Slot Type: | PCIe x8 Gen2 |
Data Rate: | InfiniBand 4x DDR |
Ports Used: | 1 |
Interconnect Type: | InfiniBand |
Software | |
---|---|
Adapter: | Mellanox MHGH28-XTC |
Adapter Driver: | OFED 1.3.1 |
Adapter Firmware: | 2.6.000 |
Operating System: | Red Hat EL 5.2, kernel 2.6.18-53 |
Local File System: | None |
Shared File System: | Lustre FS |
System State: | Multi-User |
Other Software: | None |
Hardware | |
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Vendor: | Mellanox |
Model: | Mellanox MTS3600Q-1UNC |
Switch Model: | Mellanox MTS3600Q-1UNC |
Number of Switches: | 46 |
Number of Ports: | 36 |
Data Rate: | InfiniBand 4x QDR |
Firmware: | 7.1.000 |
Topology: | Fat tree |
Primary Use: | MPI traffic, FS traffic |
The config file option 'submit' was used.
MPI startup command: mpirun command was used to start MPI jobs. This command starts an independent ring of mpd daemons, launches an MPI job, and shuts down the mpd ring upon the job termination. The mpirun command automatically detects if an MPI job is submitted in a session allocated using a job scheduler (like PBS Pro). In this case, the mpirun command extracts the host list from the respective environment and uses these nodes automatically. BIOS settings: Intel Hyper-Threading Technology (SMT): Disabled (default is Enabled) Intel Turbo Boost Technology (Turbo) : Disabled (default is Enabled) RAM configuration: Compute nodes have 1x4-GB RDIMM on each memory channel. Network: Forty six 36-port switches: 18 core switches and 28 leaf switches. Each leaf has one link to each core. Remaining 18 ports on 25 of 28 leafs are used for compute nodes. On the remaining 3 leafs the ports are used for FS nodes and other peripherals. Job placement: Each MPI job was assigned to a topologically compact set of nodes, i.e. the minimal needed number of leaf switches was used for each job: 1 switch for 16/32/64/128 ranks, 2 switches for 256 ranks, 4 switches for 512 ranks. Fileserver: Intel SR1560SF systems connected via IB to DataDirect Networks S2A9900 storage which is: 160 disks, 300GB/disk, 48TB total, 35TB available. PBS Pro was used for job submission. It has no impact on performance. Can be found at: http://www.altair.com Lustre File System 1.6.6 was used. Download from: http://www.sun.com/software/products/lustre
mpiicc |
126.lammps: | mpiicpc |
mpiifort |
mpiicc mpiifort |
121.pop2: | -DSPEC_MPI_CASE_FLAG |
126.lammps: | -DMPICH_IGNORE_CXX_SEEK |
127.wrf2: | -DSPEC_MPI_CASE_FLAG -DSPEC_MPI_LINUX |