Contents of /bowiki/README

== INTRODUCTION ==

BOWiki is an extension to MediaWiki.
The code in the cvs includes other extensions
to the Mediawiki, which are beeing used
to generate the output of BOWiki.
This project is still under heavy development,
so don't mind the ugly looking code.
BOWiki is licenced under GNU GPL.

Although BOWiki is based on Semantic Mediawiki v0.4,
the code and database layout changed significantly,
therefore do not use Semantic Mediawiki together
with BOWiki.

== INSTALL ==

Extract all files from the cvs inside the 
extensions folder of your mediawiki directory.

To setup the database according to the use in
BOWiki, import the file:
 create_bowikidb.sql
on the database name of your MediaWiki installation.
(`mysql database < create_bowikidb.sql`)

This will create additional tables used by the
BOWiki extension to store information about
external ontologies (like GeneOntology), as well as
the tables used to store semantic content.

**for MediaWiki version older than v1.10:
Edit the file [wikipath]/includes/Parser.php. Insert the line
"wfRunHooks( 'InternalParseBeforeLinks', array( &$this, &$text, null ) );"
in the method "internalParse" right after the line
"$text = $this->replaceVariables( $text, $args );"

To the end of the file LocalSettings.php,
located in the root folder of your MediaWiki
installation, add:
 include_once('extensions/BowikiLocalSettings.php');
before the closing '>'.

**for MediaWiki v1.10
To the end of the file LocalSettings.php,
located in the root folder of your MediaWiki
installation, add:
 include_once('extensions/BowikiLocalSettings.php');

== CONTACT ==

For bug reports, suggestions, acknowledgments
and every other kind of expressions, feel free to 
contact: bioonto-public@bioinformatics.org.
1	== INTRODUCTION ==
2
3	BOWiki is an extension to MediaWiki.
4	The code in the cvs includes other extensions
5	to the Mediawiki, which are beeing used
6	to generate the output of BOWiki.
7	This project is still under heavy development,
8	so don't mind the ugly looking code.
9	BOWiki is licenced under GNU GPL.
10
11	Although BOWiki is based on Semantic Mediawiki v0.4,
12	the code and database layout changed significantly,
13	therefore do not use Semantic Mediawiki together
14	with BOWiki.
15
16	== INSTALL ==
17
18	Extract all files from the cvs inside the
19	extensions folder of your mediawiki directory.
20
21	To setup the database according to the use in
22	BOWiki, import the file:
23	create_bowikidb.sql
24	on the database name of your MediaWiki installation.
25	(`mysql database < create_bowikidb.sql`)
26
27	This will create additional tables used by the
28	BOWiki extension to store information about
29	external ontologies (like GeneOntology), as well as
30	the tables used to store semantic content.
31
32	**for MediaWiki version older than v1.10:
33	Edit the file [wikipath]/includes/Parser.php. Insert the line
34	"wfRunHooks( 'InternalParseBeforeLinks', array( &$this, &$text, null ) );"
35	in the method "internalParse" right after the line
36	"$text = $this->replaceVariables( $text, $args );"
37
38	To the end of the file LocalSettings.php,
39	located in the root folder of your MediaWiki
40	installation, add:
41	include_once('extensions/BowikiLocalSettings.php');
42	before the closing '>'.
43
44	**for MediaWiki v1.10
45	To the end of the file LocalSettings.php,
46	located in the root folder of your MediaWiki
47	installation, add:
48	include_once('extensions/BowikiLocalSettings.php');
49
50	== CONTACT ==
51
52	For bug reports, suggestions, acknowledgments
53	and every other kind of expressions, feel free to
54	contact: bioonto-public@bioinformatics.org.
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