1 | # -*- coding: Latin-1 -*-
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2 |
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3 | """Heap queue algorithm (a.k.a. priority queue).
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4 |
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5 | Heaps are arrays for which a[k] <= a[2*k+1] and a[k] <= a[2*k+2] for
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6 | all k, counting elements from 0. For the sake of comparison,
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7 | non-existing elements are considered to be infinite. The interesting
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8 | property of a heap is that a[0] is always its smallest element.
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9 |
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10 | Usage:
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11 |
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12 | heap = [] # creates an empty heap
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13 | heappush(heap, item) # pushes a new item on the heap
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14 | item = heappop(heap) # pops the smallest item from the heap
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15 | item = heap[0] # smallest item on the heap without popping it
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16 | heapify(x) # transforms list into a heap, in-place, in linear time
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17 | item = heapreplace(heap, item) # pops and returns smallest item, and adds
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18 | # new item; the heap size is unchanged
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19 |
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20 | Our API differs from textbook heap algorithms as follows:
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21 |
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22 | - We use 0-based indexing. This makes the relationship between the
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23 | index for a node and the indexes for its children slightly less
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24 | obvious, but is more suitable since Python uses 0-based indexing.
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25 |
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26 | - Our heappop() method returns the smallest item, not the largest.
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27 |
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28 | These two make it possible to view the heap as a regular Python list
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29 | without surprises: heap[0] is the smallest item, and heap.sort()
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30 | maintains the heap invariant!
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31 | """
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32 |
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33 | # Original code by Kevin O'Connor, augmented by Tim Peters and Raymond Hettinger
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34 |
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35 | __about__ = """Heap queues
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36 |
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37 | [explanation by François Pinard]
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38 |
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39 | Heaps are arrays for which a[k] <= a[2*k+1] and a[k] <= a[2*k+2] for
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40 | all k, counting elements from 0. For the sake of comparison,
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41 | non-existing elements are considered to be infinite. The interesting
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42 | property of a heap is that a[0] is always its smallest element.
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43 |
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44 | The strange invariant above is meant to be an efficient memory
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45 | representation for a tournament. The numbers below are `k', not a[k]:
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46 |
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47 | 0
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48 |
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49 | 1 2
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50 |
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51 | 3 4 5 6
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52 |
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53 | 7 8 9 10 11 12 13 14
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54 |
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55 | 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30
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56 |
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57 |
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58 | In the tree above, each cell `k' is topping `2*k+1' and `2*k+2'. In
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59 | an usual binary tournament we see in sports, each cell is the winner
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60 | over the two cells it tops, and we can trace the winner down the tree
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61 | to see all opponents s/he had. However, in many computer applications
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62 | of such tournaments, we do not need to trace the history of a winner.
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63 | To be more memory efficient, when a winner is promoted, we try to
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64 | replace it by something else at a lower level, and the rule becomes
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65 | that a cell and the two cells it tops contain three different items,
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66 | but the top cell "wins" over the two topped cells.
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67 |
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68 | If this heap invariant is protected at all time, index 0 is clearly
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69 | the overall winner. The simplest algorithmic way to remove it and
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70 | find the "next" winner is to move some loser (let's say cell 30 in the
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71 | diagram above) into the 0 position, and then percolate this new 0 down
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72 | the tree, exchanging values, until the invariant is re-established.
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73 | This is clearly logarithmic on the total number of items in the tree.
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74 | By iterating over all items, you get an O(n ln n) sort.
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75 |
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76 | A nice feature of this sort is that you can efficiently insert new
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77 | items while the sort is going on, provided that the inserted items are
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78 | not "better" than the last 0'th element you extracted. This is
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79 | especially useful in simulation contexts, where the tree holds all
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80 | incoming events, and the "win" condition means the smallest scheduled
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81 | time. When an event schedule other events for execution, they are
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82 | scheduled into the future, so they can easily go into the heap. So, a
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83 | heap is a good structure for implementing schedulers (this is what I
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84 | used for my MIDI sequencer :-).
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85 |
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86 | Various structures for implementing schedulers have been extensively
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87 | studied, and heaps are good for this, as they are reasonably speedy,
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88 | the speed is almost constant, and the worst case is not much different
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89 | than the average case. However, there are other representations which
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90 | are more efficient overall, yet the worst cases might be terrible.
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91 |
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92 | Heaps are also very useful in big disk sorts. You most probably all
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93 | know that a big sort implies producing "runs" (which are pre-sorted
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94 | sequences, which size is usually related to the amount of CPU memory),
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95 | followed by a merging passes for these runs, which merging is often
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96 | very cleverly organised[1]. It is very important that the initial
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97 | sort produces the longest runs possible. Tournaments are a good way
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98 | to that. If, using all the memory available to hold a tournament, you
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99 | replace and percolate items that happen to fit the current run, you'll
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100 | produce runs which are twice the size of the memory for random input,
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101 | and much better for input fuzzily ordered.
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102 |
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103 | Moreover, if you output the 0'th item on disk and get an input which
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104 | may not fit in the current tournament (because the value "wins" over
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105 | the last output value), it cannot fit in the heap, so the size of the
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106 | heap decreases. The freed memory could be cleverly reused immediately
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107 | for progressively building a second heap, which grows at exactly the
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108 | same rate the first heap is melting. When the first heap completely
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109 | vanishes, you switch heaps and start a new run. Clever and quite
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110 | effective!
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111 |
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112 | In a word, heaps are useful memory structures to know. I use them in
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113 | a few applications, and I think it is good to keep a `heap' module
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114 | around. :-)
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115 |
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116 | --------------------
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117 | [1] The disk balancing algorithms which are current, nowadays, are
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118 | more annoying than clever, and this is a consequence of the seeking
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119 | capabilities of the disks. On devices which cannot seek, like big
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120 | tape drives, the story was quite different, and one had to be very
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121 | clever to ensure (far in advance) that each tape movement will be the
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122 | most effective possible (that is, will best participate at
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123 | "progressing" the merge). Some tapes were even able to read
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124 | backwards, and this was also used to avoid the rewinding time.
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125 | Believe me, real good tape sorts were quite spectacular to watch!
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126 | From all times, sorting has always been a Great Art! :-)
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127 | """
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128 |
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129 | __all__ = ['heappush', 'heappop', 'heapify', 'heapreplace', 'merge',
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130 | 'nlargest', 'nsmallest', 'heappushpop']
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131 |
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132 | from itertools import islice, repeat, count, imap, izip, tee
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133 | from operator import itemgetter, neg
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134 | import bisect
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135 |
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136 | def heappush(heap, item):
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137 | """Push item onto heap, maintaining the heap invariant."""
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138 | heap.append(item)
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139 | _siftdown(heap, 0, len(heap)-1)
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140 |
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141 | def heappop(heap):
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142 | """Pop the smallest item off the heap, maintaining the heap invariant."""
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143 | lastelt = heap.pop() # raises appropriate IndexError if heap is empty
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144 | if heap:
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145 | returnitem = heap[0]
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146 | heap[0] = lastelt
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147 | _siftup(heap, 0)
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148 | else:
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149 | returnitem = lastelt
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150 | return returnitem
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151 |
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152 | def heapreplace(heap, item):
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153 | """Pop and return the current smallest value, and add the new item.
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154 |
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155 | This is more efficient than heappop() followed by heappush(), and can be
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156 | more appropriate when using a fixed-size heap. Note that the value
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157 | returned may be larger than item! That constrains reasonable uses of
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158 | this routine unless written as part of a conditional replacement:
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159 |
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160 | if item > heap[0]:
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161 | item = heapreplace(heap, item)
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162 | """
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163 | returnitem = heap[0] # raises appropriate IndexError if heap is empty
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164 | heap[0] = item
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165 | _siftup(heap, 0)
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166 | return returnitem
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167 |
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168 | def heappushpop(heap, item):
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169 | """Fast version of a heappush followed by a heappop."""
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170 | if heap and heap[0] < item:
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171 | item, heap[0] = heap[0], item
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172 | _siftup(heap, 0)
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173 | return item
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174 |
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175 | def heapify(x):
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176 | """Transform list into a heap, in-place, in O(len(heap)) time."""
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177 | n = len(x)
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178 | # Transform bottom-up. The largest index there's any point to looking at
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179 | # is the largest with a child index in-range, so must have 2*i + 1 < n,
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180 | # or i < (n-1)/2. If n is even = 2*j, this is (2*j-1)/2 = j-1/2 so
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181 | # j-1 is the largest, which is n//2 - 1. If n is odd = 2*j+1, this is
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182 | # (2*j+1-1)/2 = j so j-1 is the largest, and that's again n//2-1.
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183 | for i in reversed(xrange(n//2)):
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184 | _siftup(x, i)
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185 |
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186 | def nlargest(n, iterable):
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187 | """Find the n largest elements in a dataset.
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188 |
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189 | Equivalent to: sorted(iterable, reverse=True)[:n]
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190 | """
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191 | it = iter(iterable)
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192 | result = list(islice(it, n))
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193 | if not result:
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194 | return result
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195 | heapify(result)
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196 | _heappushpop = heappushpop
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197 | for elem in it:
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198 | _heappushpop(result, elem)
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199 | result.sort(reverse=True)
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200 | return result
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201 |
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202 | def nsmallest(n, iterable):
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203 | """Find the n smallest elements in a dataset.
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204 |
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205 | Equivalent to: sorted(iterable)[:n]
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206 | """
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207 | if hasattr(iterable, '__len__') and n * 10 <= len(iterable):
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208 | # For smaller values of n, the bisect method is faster than a minheap.
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209 | # It is also memory efficient, consuming only n elements of space.
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210 | it = iter(iterable)
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211 | result = sorted(islice(it, 0, n))
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212 | if not result:
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213 | return result
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214 | insort = bisect.insort
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215 | pop = result.pop
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216 | los = result[-1] # los --> Largest of the nsmallest
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217 | for elem in it:
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218 | if los <= elem:
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219 | continue
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220 | insort(result, elem)
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221 | pop()
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222 | los = result[-1]
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223 | return result
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224 | # An alternative approach manifests the whole iterable in memory but
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225 | # saves comparisons by heapifying all at once. Also, saves time
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226 | # over bisect.insort() which has O(n) data movement time for every
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227 | # insertion. Finding the n smallest of an m length iterable requires
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228 | # O(m) + O(n log m) comparisons.
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229 | h = list(iterable)
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230 | heapify(h)
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231 | return map(heappop, repeat(h, min(n, len(h))))
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232 |
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233 | # 'heap' is a heap at all indices >= startpos, except possibly for pos. pos
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234 | # is the index of a leaf with a possibly out-of-order value. Restore the
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235 | # heap invariant.
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236 | def _siftdown(heap, startpos, pos):
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237 | newitem = heap[pos]
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238 | # Follow the path to the root, moving parents down until finding a place
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239 | # newitem fits.
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240 | while pos > startpos:
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241 | parentpos = (pos - 1) >> 1
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242 | parent = heap[parentpos]
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243 | if newitem < parent:
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244 | heap[pos] = parent
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245 | pos = parentpos
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246 | continue
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247 | break
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248 | heap[pos] = newitem
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249 |
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250 | # The child indices of heap index pos are already heaps, and we want to make
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251 | # a heap at index pos too. We do this by bubbling the smaller child of
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252 | # pos up (and so on with that child's children, etc) until hitting a leaf,
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253 | # then using _siftdown to move the oddball originally at index pos into place.
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254 | #
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255 | # We *could* break out of the loop as soon as we find a pos where newitem <=
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256 | # both its children, but turns out that's not a good idea, and despite that
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257 | # many books write the algorithm that way. During a heap pop, the last array
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258 | # element is sifted in, and that tends to be large, so that comparing it
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259 | # against values starting from the root usually doesn't pay (= usually doesn't
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260 | # get us out of the loop early). See Knuth, Volume 3, where this is
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261 | # explained and quantified in an exercise.
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262 | #
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263 | # Cutting the # of comparisons is important, since these routines have no
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264 | # way to extract "the priority" from an array element, so that intelligence
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265 | # is likely to be hiding in custom __cmp__ methods, or in array elements
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266 | # storing (priority, record) tuples. Comparisons are thus potentially
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267 | # expensive.
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268 | #
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269 | # On random arrays of length 1000, making this change cut the number of
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270 | # comparisons made by heapify() a little, and those made by exhaustive
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271 | # heappop() a lot, in accord with theory. Here are typical results from 3
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272 | # runs (3 just to demonstrate how small the variance is):
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273 | #
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274 | # Compares needed by heapify Compares needed by 1000 heappops
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275 | # -------------------------- --------------------------------
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276 | # 1837 cut to 1663 14996 cut to 8680
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277 | # 1855 cut to 1659 14966 cut to 8678
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278 | # 1847 cut to 1660 15024 cut to 8703
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279 | #
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280 | # Building the heap by using heappush() 1000 times instead required
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281 | # 2198, 2148, and 2219 compares: heapify() is more efficient, when
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282 | # you can use it.
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283 | #
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284 | # The total compares needed by list.sort() on the same lists were 8627,
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285 | # 8627, and 8632 (this should be compared to the sum of heapify() and
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286 | # heappop() compares): list.sort() is (unsurprisingly!) more efficient
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287 | # for sorting.
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288 |
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289 | def _siftup(heap, pos):
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290 | endpos = len(heap)
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291 | startpos = pos
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292 | newitem = heap[pos]
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293 | # Bubble up the smaller child until hitting a leaf.
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294 | childpos = 2*pos + 1 # leftmost child position
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295 | while childpos < endpos:
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296 | # Set childpos to index of smaller child.
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297 | rightpos = childpos + 1
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298 | if rightpos < endpos and not heap[childpos] < heap[rightpos]:
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299 | childpos = rightpos
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300 | # Move the smaller child up.
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301 | heap[pos] = heap[childpos]
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302 | pos = childpos
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303 | childpos = 2*pos + 1
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304 | # The leaf at pos is empty now. Put newitem there, and bubble it up
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305 | # to its final resting place (by sifting its parents down).
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306 | heap[pos] = newitem
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307 | _siftdown(heap, startpos, pos)
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308 |
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309 | # If available, use C implementation
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310 | try:
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311 | from _heapq import heappush, heappop, heapify, heapreplace, nlargest, nsmallest, heappushpop
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312 | except ImportError:
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313 | pass
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314 |
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315 | def merge(*iterables):
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316 | '''Merge multiple sorted inputs into a single sorted output.
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317 |
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318 | Similar to sorted(itertools.chain(*iterables)) but returns a generator,
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319 | does not pull the data into memory all at once, and assumes that each of
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320 | the input streams is already sorted (smallest to largest).
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321 |
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322 | >>> list(merge([1,3,5,7], [0,2,4,8], [5,10,15,20], [], [25]))
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323 | [0, 1, 2, 3, 4, 5, 5, 7, 8, 10, 15, 20, 25]
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324 |
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325 | '''
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326 | _heappop, _heapreplace, _StopIteration = heappop, heapreplace, StopIteration
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327 |
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328 | h = []
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329 | h_append = h.append
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330 | for itnum, it in enumerate(map(iter, iterables)):
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331 | try:
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332 | next = it.next
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333 | h_append([next(), itnum, next])
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334 | except _StopIteration:
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335 | pass
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336 | heapify(h)
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337 |
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338 | while 1:
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339 | try:
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340 | while 1:
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341 | v, itnum, next = s = h[0] # raises IndexError when h is empty
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342 | yield v
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343 | s[0] = next() # raises StopIteration when exhausted
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344 | _heapreplace(h, s) # restore heap condition
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345 | except _StopIteration:
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346 | _heappop(h) # remove empty iterator
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347 | except IndexError:
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348 | return
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349 |
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350 | # Extend the implementations of nsmallest and nlargest to use a key= argument
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351 | _nsmallest = nsmallest
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352 | def nsmallest(n, iterable, key=None):
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353 | """Find the n smallest elements in a dataset.
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354 |
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355 | Equivalent to: sorted(iterable, key=key)[:n]
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356 | """
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357 | if key is None:
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358 | it = izip(iterable, count()) # decorate
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359 | result = _nsmallest(n, it)
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360 | return map(itemgetter(0), result) # undecorate
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361 | in1, in2 = tee(iterable)
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362 | it = izip(imap(key, in1), count(), in2) # decorate
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363 | result = _nsmallest(n, it)
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364 | return map(itemgetter(2), result) # undecorate
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365 |
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366 | _nlargest = nlargest
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367 | def nlargest(n, iterable, key=None):
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368 | """Find the n largest elements in a dataset.
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369 |
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370 | Equivalent to: sorted(iterable, key=key, reverse=True)[:n]
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371 | """
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372 | if key is None:
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373 | it = izip(iterable, imap(neg, count())) # decorate
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374 | result = _nlargest(n, it)
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375 | return map(itemgetter(0), result) # undecorate
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376 | in1, in2 = tee(iterable)
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377 | it = izip(imap(key, in1), imap(neg, count()), in2) # decorate
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378 | result = _nlargest(n, it)
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379 | return map(itemgetter(2), result) # undecorate
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380 |
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381 | if __name__ == "__main__":
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382 | # Simple sanity test
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383 | heap = []
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384 | data = [1, 3, 5, 7, 9, 2, 4, 6, 8, 0]
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385 | for item in data:
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386 | heappush(heap, item)
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387 | sort = []
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388 | while heap:
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389 | sort.append(heappop(heap))
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390 | print sort
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391 |
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392 | import doctest
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393 | doctest.testmod()
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