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COVID-19 Analytics in Jupyter: Intuitive Provenance Integration Using ProvIt

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Provenance and Annotation of Data and Processes (IPAW 2020, IPAW 2021)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 12839))

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Abstract

Whilst the need to record and understand the evolution of data, together with the processes and users associated with those changes, is now widely appreciated, the uptake of solutions to these issues remains slow. Data provenance techniques have the potential to provide such an understanding, but their use is often considered a specialist activity, requiring detailed knowledge of standards such as W3C PROV. In this work, we introduce ProvIt, a suite of tools designed to lower the barriers to entry for the use of provenance technology. We demonstrate the utility of ProvIt by using it to add provenance capabilities to the Jupyter IDE, in order to provide insight into the tools used by a group of researchers analysing a COVID-19 dataset.

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Notes

  1. 1.

    https://jupyter.org.

  2. 2.

    https://neo4j.com.

  3. 3.

    https://www.rabbitmq.com.

  4. 4.

    https://github.com/kclhi/jupyter.

References

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  2. De Nies, T., et al.: Git2PROV: exposing version control system content as W3C PROV. In: CEUR Workshop Proceedings, vol. 1035, pp. 125–128 (2013)

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  3. Fairweather, E., Alper, P., Porat, T., Curcin, V.: Architecture for template-driven provenance recording. In: Belhajjame, K., Gehani, A., Alper, P. (eds.) IPAW 2018. LNCS, vol. 11017, pp. 217–221. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-98379-0_23

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  4. Fairweather, E., Wittner, R., Chapman, M., Holub, P., Curcin, V.: Non-repudiable provenance for clinical decision support systems. In: Proceedings of the 8th International Provenance and Annotation Workshop (2020)

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  5. Samuel, S., König-Ries, B.: ProvBook: provenance-based semantic enrichment of interactive notebooks for reproducibility. In: CEUR Workshop Proceedings, vol. 2180, pp. 231–234 (2018)

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Correspondence to Martin Chapman .

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Chapman, M., Fairweather, E., Khan, A., Curcin, V. (2021). COVID-19 Analytics in Jupyter: Intuitive Provenance Integration Using ProvIt. In: Glavic, B., Braganholo, V., Koop, D. (eds) Provenance and Annotation of Data and Processes. IPAW IPAW 2020 2021. Lecture Notes in Computer Science(), vol 12839. Springer, Cham. https://doi.org/10.1007/978-3-030-80960-7_22

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  • DOI: https://doi.org/10.1007/978-3-030-80960-7_22

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-80959-1

  • Online ISBN: 978-3-030-80960-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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