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@seqan

SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

Pinned

  1. seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 334 76

  2. seqan Public

    SeqAn's official repository.

    C++ 431 174

Repositories

  • stellar3 Public

    the SwifT Exact LocaL AligneR

    C++ 0 BSD-3-Clause 1 0 1 Updated May 15, 2023
  • Hierarchical_Interleaved_Bloomfilter Public

    HIBF and IBF

    C++ 0 1 0 0 Updated May 15, 2023
  • raptor Public

    A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

    C++ 37 BSD-3-Clause 16 5 1 Updated May 15, 2023
  • seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 334 76 17 0 Updated May 15, 2023
  • seqan Public

    SeqAn's official repository.

    C++ 431 174 103 4 Updated May 14, 2023
  • seqan-std Public

    Implementation of several C++23 views

    C++ 0 2 0 0 Updated May 13, 2023
  • sahara Public

    Approximate Pattern Matching with Search Schemes

    C++ 0 BSD-3-Clause 0 0 1 Updated May 12, 2023
  • needle Public

    A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

    C++ 10 BSD-3-Clause 6 7 2 Updated May 11, 2023
  • lambda Public

    LAMBDA – the Local Aligner for Massive Biological DatA

    C++ 65 19 8 1 Updated May 10, 2023
  • chopper Public

    A tool for partitioning a set of sequences into similar batches.

    C++ 7 BSD-3-Clause 9 10 3 Updated May 9, 2023
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