codon-usage

📊 Codon usage tables in code-friendly format + Python bindings

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

Python3 implementation of commonly used codon usage statistics

Toolkit to analyze codon usage bias

Simple Python program to perform codon optimization or heterology calculations.

Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)

A slimmed down fork of CodonW with python bindings

Comparative analysis pipeline of Population's Codon Usage

MATLAB package for codon usage bias and NGS analysis

A tool with nice GUI to visualize the codon usage frequencies in whole genomes

Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)

Analysis of codon positional dependency

A codon useage bias analysis toolkit

Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs

A codon pair score/codon pair bias calculator

A python project for analysis of codon usage for gene or genome analysis

Analysis of codon usage in oncogene families.

A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.

A script for codon harmonization.

Research on position-dependent hydrogen bonds per codon