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@OHDSI

Observational Health Data Sciences and Informatics

Popular repositories

  1. CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    Batchfile 582 355

  2. Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 178 86

  3. Vocabulary-v5.0 Public

    PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for repli…

    PLpgSQL 125 53

  4. PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 119 63

  5. Achilles Public

    Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

    R 95 86

  6. WhiteRabbit Public

    WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interacti…

    Java 93 55

Repositories

  • ArachneUI

    Network infrastructure for collaborative studies across disparate data nodes and researches

    SCSS 13 4 6 10 Updated Sep 16, 2021
  • WebAPI

    OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    Java 84 106 89 3 Updated Sep 16, 2021
  • PatientLevelPrediction

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 119 63 32 2 Updated Sep 15, 2021
  • CohortDiagnostics

    An R package for performing various cohort diagnostics.

    R 20 22 22 (1 issue needs help) 0 Updated Sep 15, 2021
  • Atlas

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 178 Apache-2.0 86 223 7 Updated Sep 15, 2021
  • drat

    drat repository for OHDSI R packages

    4 6 0 0 Updated Sep 15, 2021
  • SqlRender

    This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

    R 46 48 31 0 Updated Sep 15, 2021
  • CohortIncidence

    Contains the Java and R assets to perform Incidence calculations on a CDM

    Java 1 Apache-2.0 0 0 0 Updated Sep 15, 2021
  • ETL-CMS

    Workproducts to ETL CMS datasets into OMOP Common Data Model

    Python 70 Apache-2.0 45 15 0 Updated Sep 14, 2021
  • MIMIC

    MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

    Python 10 Apache-2.0 5 9 1 Updated Sep 14, 2021
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