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20 public repositories
matching this topic...
Brings transcriptomics to the tidyverse
Statistical Analysis of RNA-Seq Tools
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
A computational pipeline for bulk ATAC-seq (or RNA-seq)
This tutorial is created for educational purpose
Various tutorials on how to analyse transcriptomic data.
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Updated
May 11, 2021
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HTML
Probabilistic outlier identification for bulk RNA sequencing data
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
Sea lion urine comparison with spectral counting.
Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)
some scripts to process transcriptomics and Chip-seq data
A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks
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Updated
Sep 6, 2019
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Jupyter Notebook
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Updated
May 12, 2021
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JavaScript
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Updated
Jun 10, 2017
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Python
Enhanced volcano plot using edgeR data
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Analyses combining RRBS, ATAC-seq, and RNA-seq data for purple urchins
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Updated
Mar 2, 2021
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Shell
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
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