Galaxy Project

Repositories

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 696 848 1,512 (134 issues need help) 151 Updated Jun 26, 2021

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy hacktoberfest toolshed wrappers iuc
  HTML MIT 286 111 202 (4 issues need help) 153 Updated Jun 26, 2021

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  Pug 166 49 41 (1 issue needs help) 1 Updated Jun 25, 2021

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 23 7 8 13 Updated Jun 25, 2021

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  Python MIT 32 22 10 5 Updated Jun 25, 2021

• planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  cli sdk click usegalaxy hacktoberfest commonwl
  Python MIT 68 66 243 (14 issues need help) 12 Updated Jun 25, 2021

• admin-training

  Galaxy Admin Training

  training nginx ansible development admin tools cluster
  HCL 61 54 12 0 Updated Jun 25, 2021

• VGPWorkflows Archived
  0 0 0 0 Updated Jun 25, 2021

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 502 203 119 34 Updated Jun 25, 2021

• iwc

  Intergalactic Workflow Commission
  Python 11 12 11 4 Updated Jun 25, 2021

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  Jinja MIT 10 6 5 5 Updated Jun 25, 2021

• dockstore-galaxy-interface

  Dockstore Plugin for Galaxy Workflows

  docker dockstore galaxy-workflows
  Java 4 2 1 3 Updated Jun 25, 2021

• galaxykubeman-helm

  Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
  Shell MIT 3 0 0 0 Updated Jun 24, 2021

• planemo-ci-action

  Test, deploy, or lint changed Galaxy tools or workflows using Planemo.
  Shell MIT 3 3 4 2 Updated Jun 24, 2021

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 17 22 97 (1 issue needs help) 3 Updated Jun 24, 2021

• ephemeris

  Library for managing Galaxy plugins - tools, index data, and workflows.
  Python 31 20 21 (2 issues need help) 8 Updated Jun 24, 2021

• usage-metering

  Scripts and queries for inspecting Galaxy usage data.
  MIT 1 1 0 0 Updated Jun 23, 2021

• ansible-pulsar

  An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
  Jinja 7 4 2 2 Updated Jun 23, 2021

• galaxy-test-data

  Test data files used by Galaxy.
  HTML 7 1 0 0 Updated Jun 22, 2021

• gxadmin

  Handy command line utility for Galaxy administrators 🚀

  automation sql sysadmin galaxy galaxy-project postgres-databases
  Shell GPL-3.0 14 13 8 (2 issues need help) 1 Updated Jun 22, 2021

• planemo-monitor

  Planemo scripting to monitor repositories and register tool containers.
  Shell 8 4 3 1 Updated Jun 22, 2021

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 76 122 7 4 Updated Jun 18, 2021

• ansible-proftpd

  Ansible role for installing and configuring ProFTPD for Galaxy
  Jinja 6 5 2 0 Updated Jun 18, 2021

• bioblend

  A Python library for interacting with Galaxy and CloudMan APIs

  api api-client usegalaxy cloudman hacktoberfest
  Python MIT 97 72 35 6 Updated Jun 13, 2021

• galaxy-tool-repository-template
  MIT 2 1 0 0 Updated Jun 9, 2021

• pulsar

  Distributed job execution application built for Galaxy
  Python Apache-2.0 37 33 54 (5 issues need help) 6 Updated Jun 8, 2021

• galaxy-language-server

  Galaxy language server to help in Galaxy (https://galaxyproject.org/) tool wrappers development (work in progress).
  Python Apache-2.0 4 14 6 (1 issue needs help) 0 Updated Jun 8, 2021

• ansible-galaxy

  An Ansible role for managing a Galaxy server
  Jinja 63 42 17 5 Updated Jun 7, 2021

• ansible-nginx

  An Ansible role for managing an nginx server.
  Jinja 5 4 3 1 Updated Jun 2, 2021

• dunovo

  Forked from NickSto/dunovo

  Reference-free duplex sequencing pipeline.

  science bioinformatics genomics biology sequencing
  Python 6 14 17 2 Updated Jun 2, 2021