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biomedical

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scispacy
ChantalvanSon
ChantalvanSon commented Mar 10, 2020

First of all, thanks for creating scispacy, I think it's an amazing tool and very useful!!

I was running into an issue when saving the output of scispacy. I tried to pickle a Doc object, as explained on the website of spaCy, as follows:

import spacy
import pickle

nlp = spacy.load("en_core_sci_sm")

# add the Abbreviation Detector
abbrev
aim123
aim123 commented Jan 7, 2020

Please replace every line in curly brackets { like this } with an appropriate description, and remove this line.

Description

{ I am new to Grakn as well as Java. Can you please provide a document which helps novice like us to run the Java code for Text mining in grakn. Or Can the same be implemented in Python }
Request to provide a step by step instructions.

Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association detection). This has been published as part of the paper: Dieter Galea, Ivan Laponogov, Kirill Veselkov; Exploiting and assessing multi-source data for supervised biomedical named entity recognition, Bioinformatics, bty152, https://doi.org/10.1093/bioinformatics/bty152 . If you would like to add other (or your) corpora, please submit a pull request and I'll happily approve it.

  • Updated Mar 15, 2018

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