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ggirelli/README.md
            Hi there! My name is Gabriele Girelli!
            I am originally from Verona (Italy),
            but I am currently based in Stockholm (Sweden)
            where I am working as PhD student at BiCroLabs,
            Karolinska Institutet / Science for Life Laboratory.

            My interests include:
            - genome_architecture
            - fluorescence_in_situ_hybridization
            - computational_oncology
            - bioimaging

            I trained in Biotech and Bioinformatics, through my studies:
            (2009, 2012) BS in Biomolecular Science and Technology @ University of Trento
            (2012, 2014) MS in Cellular and Molecular Biotechnology @ University of Trento
            (2015, 2021) PhD studies @ Karolinska Institutet / Science for Life Laboratory

            I also worked in a few labs:
            (2012, 2012) Arosio lab @ Sezione di Trento, IBF / CNR
            (2014, 2014) Quackenbush lab @ Dana-Farber Cancer Institute, Boston
            (2014, 2015) Demichelis lab @ CIBIO, University of Trento
            (2015, 2021) BiCro lab @ Karolinska Institutet / Science for Life Laboratory

            As a bioinformagician, I am currently learning to program
            in Julia, and my favorite languages are:
            - 9/10 : Python, R
            - 8/10 : bash
            - 7/10 : JavaScript, C, C++
            - 6/10 : PHP, MATLAB
            - 3/10 : Perl, Java

            In my free time, I love to sketch (digital art, classical art),
            and my favorite media are: Watercolors, Alcohol markers, Brush pen, Dip pen, Pencil.


🐥 Twitter | 👔 LinkedIn | 🎨 Instagram | 🎓 Publications | 🚀 Blog


Short CV generated using the MyShortCV Python3 class in this Gist with the following command:

curl -s https://gist.githubusercontent.com/ggirelli/4f26ced5333e4082b969b56923426125/raw/ | python3

Pinned

  1. Python package to trim and extract flags from FASTA and FASTQ files.

    Python

  2. Software to estimate oligonucleotide duplexes melting temperature. Includes cutting edge monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and…

    Python 3 2

  3. iFISH Probe Design: a Python3 package to build iFISH probes.

    Python 2 5

  4. Binning biological data tracks and producing RDS containing data.tables

    R 1

  5. R script for fast and streamlined Radiality Calculation from GPSeq data.

    R

  6. pygpseq Archived

    Python3 package to analyse GPSeq images and manage TIFF files.

    Python 1 2

1,572 contributions in the last year

Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Mon Wed Fri
Activity overview
Contributed to ggirelli/GPSeq-source-data, ggirelli/fastx-barber, ggirelli/GPSeq-RadiCal and 5 other repositories
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Contribution activity

August 2020

Created an issue in ggirelli/fastx-barber that received 1 comment

[REQUEST] Fix flake8 warnings

Address the following: ./fastx_barber/scripts/extract.py:133:1: C901 'run_chunk' is too complex (7) ./fastx_barber/scripts/common.py:177:14: F541 f…

1 comment

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