Common Workflow Language

Repositories

• cwl-utils

  Python 3.6+ utilities for CWL

  common-workflow-language cwl commonwl
  Python GPL-3.0 7 11 14 (1 issue needs help) 1 Updated Nov 13, 2020

• cwltool

  Common Workflow Language reference implementation

  science containers common-workflow-language cwl workflows
  Python Apache-2.0 159 223 350 (36 issues need help) 27 Updated Nov 13, 2020

• galaxy

  Forked from galaxyproject/galaxy

  Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.

  bh2019europe biohackeu20
  Python 655 10 37 2 Updated Nov 13, 2020

• cwl-v1.2

  Released CWL v1.2 specification
  Common Workflow Language Apache-2.0 3 1 4 1 Updated Nov 13, 2020

• common-workflow-language

  Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

  science workflow containers common-workflow-language cwl workflows commonwl
  Python Apache-2.0 174 1,195 225 (6 issues need help) 22 Updated Nov 13, 2020

• common-workflow-language.github.io

  GitHub pages source for the main CWL website, please send PRs to https://github.com/common-workflow-language/cwl-website
  HTML 5 2 0 0 Updated Nov 13, 2020

• cwl-website

  www.commonwl.org

  common-workflow-language cwl
  Common Workflow Language Apache-2.0 14 6 12 3 Updated Nov 13, 2020

• cwlviewer

  A web application to view and share Common Workflow Language workflows

  workflow common-workflow-language cwl workflows
  Java Apache-2.0 16 25 44 (1 issue needs help) 4 Updated Nov 13, 2020

• schema_salad

  Semantic Annotations for Linked Avro Data
  Python Apache-2.0 36 45 39 (3 issues need help) 3 Updated Nov 12, 2020

• cwl-v1.1

  Current stable CWL v1.1 specification

  cwl
  Common Workflow Language Apache-2.0 6 4 0 6 Updated Nov 10, 2020

• user_guide

  The CWL v1.0 user guide

  workflow common-workflow-language cwl workflows
  HTML 29 12 49 (1 issue needs help) 5 Updated Nov 9, 2020

• cwlavro

  Auto-generated Avro classes for manipulating CWL (starting with Java). Works with v1.0
  Java Apache-2.0 3 5 0 0 Updated Nov 3, 2020

• cwltest

  Framework for testing CWL tools and workflows

  common-workflow-language cwl
  Python Apache-2.0 12 9 11 3 Updated Oct 30, 2020

• cwl-upgrader

  Upgrade CWL draft-3 to v1.0 syntax, or v1.0 to v1.1

  cwl commonwl
  Python Apache-2.0 2 2 7 0 Updated Oct 23, 2020

• workflow-service

  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  Python Apache-2.0 19 29 23 2 Updated Oct 23, 2020

• logo

  CWL logo source

  cwl
  0 1 1 0 Updated Oct 2, 2020

• w3id.org

  Forked from perma-id/w3id.org

  Website source code for w3id.org
  ApacheConf 583 0 0 0 Updated Aug 7, 2020

• governance

  Holds public material generated by and for the CWL board.

  cwl
  HTML 0 0 3 0 Updated Aug 7, 2020

• .github

  Default community health files for the CWL project
  0 0 1 0 Updated Jul 7, 2020

• for_decision_makers

  One page CWL explainer for Business/policy decision makers
  Apache-2.0 0 0 0 0 Updated Jul 2, 2020

• for_novices

  One page CWL explainer for workflow novices
  1 0 1 0 Updated Jul 2, 2020

• cwl-ex

  CWL experimental grammar
  JavaScript 0 12 3 0 Updated Jul 2, 2020

• GSoD-proposals-2019
  Apache-2.0 0 0 0 0 Updated Jul 2, 2020

• conformance

  Location to store the results of CWL conformance testing
  Apache-2.0 0 0 0 0 Updated Jul 2, 2020

• cwl-language-server

  A Language Server for CWL

  language-server common-workflow-language cwl commonwl
  Python Apache-2.0 1 2 2 0 Updated Jul 2, 2020

• cwl-intro-gui-workshop

  Materials to teach workshop about CWL using the Rabix Composer
  Common Workflow Language Apache-2.0 2 5 5 0 Updated Jul 2, 2020

• cwlprov-py

  cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions

  python provenance cwl bagit research-object prov
  Python Apache-2.0 1 1 0 0 Updated Jul 2, 2020

• cwlprov

  Profile for provenance research object of a CWL workflow run

  workflow linked-data rdf provenance cwl bagit research-object
  Apache-2.0 1 11 2 0 Updated Jul 2, 2020

• cwldep

  Common Workflow Language dependency manager
  Python Apache-2.0 1 6 0 0 Updated Jul 2, 2020

• acd2cwl

  CWL generator for ACD (EMBOSS) files

  commonwl
  Python MIT 0 2 0 0 Updated Jul 2, 2020