Human Immune Monitoring Center at Mount Sinai

Repositories

• clustergrammer-gl

  WebGL Clustergrammer JavaScript Library

  webgl biology heatmap regl
  JavaScript MIT 1 11 24 (4 issues need help) 0 Updated Jul 3, 2020

• covid-19_sinai_reviews
  HTML CC-BY-4.0 6 8 1 1 Updated Jun 15, 2020

• clustergrammer2

  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.

  visualization javascript python webgl binder biology heatmap
  HTML BSD-3-Clause 10 44 20 (4 issues need help) 3 Updated Jun 9, 2020

• cytutils

  Cytometry quality control and reproducibility utilities
  R GPL-3.0 5 2 1 1 Updated Jun 1, 2020

• rapids-single-cell-examples

  Forked from clara-parabricks/rapids-single-cell-examples

  Examples of single-cell genomic analysis accelerated with RAPIDS
  Jupyter Notebook Apache-2.0 6 1 0 0 Updated May 29, 2020

• clustergrammer2-notebooks

  Examples using Clustergrammer2 to explore high-dimensional datasets.

  bioinformatics binder jupyter notebook scrna-seq binder-ready
  Jupyter Notebook 4 21 6 0 Updated May 24, 2020

• clustergrammer-widget2-deprecated
  Python BSD-3-Clause 0 0 0 6 Updated Apr 30, 2020

• covid-19_tenoever
  Jupyter Notebook 0 0 0 0 Updated Apr 27, 2020

• LegendScreen_CyTOF
  Jupyter Notebook 0 0 0 0 Updated Apr 21, 2020

• himc_helper_functions
  Python 0 0 8 0 Updated Feb 22, 2020

• clustergrammer2-signatures

  Collection of cell type and cell state signatures built to easily integrate with Clustergrammer2 single cell toolkit.
  0 0 1 0 Updated Feb 9, 2020

• visium-clustergrammer2

  Spatial Transcriptomics Dashboard

  python webgl jupyter heatmap scrna-seq voila visium
  Jupyter Notebook BSD-3-Clause 1 17 10 0 Updated Feb 7, 2020

• codex_dashboard

  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  Jupyter Notebook BSD-3-Clause 2 9 5 0 Updated Jan 29, 2020

• clustergrammer2-test
  Jupyter Notebook 0 0 0 0 Updated Nov 10, 2019

• cellranger-aws-pipeline-docs
  Python 2 0 0 2 Updated Sep 25, 2019

• gaussian-density

  Forked from voila-gallery/gaussian-density

  Using voila with bqplot to visualize gaussian density
  Jupyter Notebook BSD-3-Clause 5 0 0 0 Updated Jul 31, 2019

• voila

  Forked from voila-dashboards/voila

  From Jupyter notebooks to standalone web applications and dashboards
  Python 192 0 0 0 Updated Jul 31, 2019

• codex_spatial_spleen
  HTML 0 0 0 0 Updated Jul 31, 2019

• clustergrammer2_test
  HTML 0 0 0 0 Updated Jul 13, 2019

• clustergrammer-binder-upload-test
  0 0 0 0 Updated Jul 13, 2019

• gallery

  Forked from voila-dashboards/tljh-voila-gallery

  Configuration for deploying Voila Gallery
  Python BSD-3-Clause 35 0 0 0 Updated Jul 9, 2019

• voila-hello-world-example

  Forked from voila-gallery/hello-world-example

  A Hello World application to get started with voila
  Jupyter Notebook 2 0 0 0 Updated Jul 8, 2019

• clustergrammer2-binder-test
  0 0 0 0 Updated Jun 17, 2019

• EmbryoTimecourse2018

  Forked from MarioniLab/EmbryoTimecourse2018

  Data and analysis scripts for our Embryo Timecourse paper.
  HTML 26 0 0 0 Updated May 14, 2019

• ismms-himc.github.io

  Website for the 2018 HIMC Single-Cell Symposium
  HTML 0 0 0 0 Updated Feb 15, 2019

• Enrichr_Libraries_of_Interest
  0 0 0 0 Updated Feb 3, 2019

• scanpy-batch-correct
  HTML 0 1 0 0 Updated Jan 9, 2019

• clustergrammer2-deprecated

  A custom Jupyter widget library built using the widget-ts-cookiecutter.
  Python BSD-3-Clause 0 0 0 0 Updated Nov 4, 2018

• test_sundar
  Jupyter Notebook 0 0 0 0 Updated Oct 31, 2018

• clustergrammer_signature_methods
  HTML 0 0 6 0 Updated Oct 30, 2018