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578 followers · 270 following · 1.7k

Highlights

  • Arctic Code Vault Contributor

Organizations

@yanlilab @mbioinfo
shenwei356/README.md
  • 👨‍🔬 I'm a computational postdoc at CQMU, China.
  • 🔬 I’m currently working on microbial genomics and metagenomics.
  • 🔭 I'm passionate about reproducible research and open source software.
  • 💻 I use Golang to write tools for accelerating data wrangling, but I want to dig into R and learn Rust.

Pinned

  1. seqkit

    A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

    Go 525 83

  2. csvtk

    A cross-platform, efficient and practical CSV/TSV toolkit in Golang

    Go 498 51

  3. rush

    A cross-platform command-line tool for executing jobs in parallel

    Go 313 21

  4. taxonkit

    A Cross-platform and Efficient NCBI Taxonomy Toolkit

    Go 81 17

  5. unikmer

    A golang package and a CLI for manipulating small k-mers (k <= 32) optional with Taxids but without frequency information

    Go 25 4

  6. taxid-changelog

    NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.

    R 10

465 contributions in the last year

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Activity overview
Contributed to shenwei356/unikmer, shenwei356/seqkit, shenwei356/csvtk and 5 other repositories

Contribution activity

August 2020

Created a pull request in will-rowe/nthash that received 2 comments

add 'canonical' parameter to Next()

Hi Will, Channel sending and receiving use lock therefore cause blocking and make the func (nthi *NTHi) Hash(canonical bool) <-chan uint64 iterator…

+53 −51 • 2 comments

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