Galaxy Project

Repositories

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 372 152 87 25 Updated Jul 18, 2020

• admin-training

  Galaxy Admin Training

  training nginx ansible development admin tools cluster
  Shell 55 43 5 0 Updated Jul 18, 2020

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 641 751 1,283 (132 issues need help) 154 Updated Jul 18, 2020

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy toolshed wrappers iuc
  HTML MIT 251 80 177 (6 issues need help) 110 Updated Jul 18, 2020

• planemo

  Command-line utilities to assist in developing tools for the Galaxy Project.

  usegalaxy
  Python 60 55 213 (14 issues need help) 9 Updated Jul 18, 2020

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 59 98 6 6 Updated Jul 18, 2020

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 17 5 6 8 Updated Jul 17, 2020

• galaxykubeman-helm

  Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
  MIT 1 0 0 1 Updated Jul 17, 2020

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  HTML 151 39 48 (1 issue needs help) 1 Updated Jul 17, 2020

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 15 21 103 (1 issue needs help) 2 Updated Jul 16, 2020

• cloudlaunch-registry

  An application registry for CloudLaunch
  1 0 0 1 Updated Jul 16, 2020

• ansible-cvmfs

  An Ansible role for installing and configuring CernVM-FS (CVMFS)
  C 5 3 0 0 Updated Jul 16, 2020

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman
  Python 20 30 4 (1 issue needs help) 0 Updated Jul 16, 2020

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  TSQL MIT 24 17 10 1 Updated Jul 16, 2020

• tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  tools usegalaxy toolshed
  Python 81 34 76 11 Updated Jul 16, 2020

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  Python MIT 10 4 5 6 Updated Jul 15, 2020

• cloudlaunch-ui

  A user interface for the cloudlaunch app

  cloud angular5
  TypeScript MIT 9 5 8 0 Updated Jul 15, 2020

• cloudlaunch

  Easily launch cloud applications.

  python django angular cloud multi-cloud
  Python 35 35 24 0 Updated Jul 15, 2020

• GTN-community-paper-2020
  TeX 1 0 0 0 Updated Jul 15, 2020

• galaxy-docker-k8s

  An Ansible playbook for building a Galaxy container for Kubernetes.
  Shell MIT 6 4 1 0 Updated Jul 14, 2020

• ansible-galaxy

  An Ansible role for managing a Galaxy server
  Python 53 36 13 5 Updated Jul 14, 2020

• ansible-pulsar

  An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
  6 4 1 2 Updated Jul 14, 2020

• ansible-common-roles

  A collection of simple Ansible roles for common (mostly system) tasks
  Python MIT 5 13 0 0 Updated Jul 8, 2020

• ansible-nginx

  An Ansible role for managing an nginx server.
  2 4 3 2 Updated Jul 8, 2020

• TIS_methods_review
  Jupyter Notebook 0 0 0 0 Updated Jul 6, 2020

• bioblend

  A Python library for interacting with Galaxy and CloudMan API

  api api-client usegalaxy cloudman
  Python MIT 86 66 33 4 Updated Jul 5, 2020

• galaxy-flavor-testing

  Travis scripts to unify and ease the testing of Galaxy favors
  Makefile MIT 4 6 2 0 Updated Jul 3, 2020

• ansible-galaxy-extras

  Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
  Shell 35 10 18 6 Updated Jul 2, 2020

• ansible-mailman3

  Ansible role for installing and managing the GNU Mailman 3 suite
  2 1 0 1 Updated Jun 27, 2020

• starforge-recipes

  Build recipes for Galaxy Starforge
  Shell MIT 6 0 7 0 Updated Jun 24, 2020