Next: Contacting the authors
Up: Introduction
Previous: Introduction
Contents
Index
VMD is part of a suite of tools developed by the Theoretical Biophysics
group at the University of Illinois.
- BioCoRE
BioCoRE is a web-based collaborative environment for structural biology
which provides tools to allow collaboration between researchers down the
hall or around the world. Anyone with access to the internet and a
standard web browser can join BioCoRE and create or be added to research
projects, and information about a particular project is shared among all
members of that project. More information is available at the
BioCoRE home page
- NAMD
A parallel, object-oriented molecular
dynamics code designed for high-performance simulation of large
biomolecular systems.
NAMD uses the CHARMM force field and file formats compatible
with both CHARMM and X-PLOR.
NAMD supports both periodic and non-periodic boundaries with
efficient full electrostatics, multiple timestepping, constant
pressure and temperature ensemble simulation methods.
More information is available at the
NAMD home page
- JMV
JMV is an easy-to-use Java-based molecular viewer which uses Java3D to
provide hardware accelerated rendering of molecules.
JMV is designed as component software,
and can be used within other programs, or as a standalone application.
More information is available at the
JMV home page
- MDTools
MDTools is a collection of programs, scripts, and utilities provided
for researchers to make various modeling and simulation tasks easier.
More information is available at the
MDTools home page
- Structural Biology Software Database
The database contains programs which are of interest to researchers in
structural biology, quantum chemistry, and bioinformatics.
The database entries are contributed by users, and are moderated to provide
a high quality resource.
More information is available at the
Structural Biology Software Database home page
For more information on our software efforts, see the
Theoretical Biophysics Group home page.
Next: Contacting the authors
Up: Introduction
Previous: Introduction
Contents
Index
vmd@ks.uiuc.edu