# # VMDPrefs Theme File # # VMDPrefs was written by: # Christopher Mayne # Tajkhorshid Laboratory (http://csbmb.beckman.illinois.edu) # Beckman Institute for Advanced Science and Technology # University of Illinois at Urbana-Champaign # # VMDPrefs is currently maintained by: # Christopher Mayne | cmayne2@illinois.edu | http://www.ks.uiuc.edu/~mayne # # ------------------------------------------------------------------------------ # WARNING: Do not edit this file by hand! # VMDPrefs uses a very specific parsing scheme when reading theme files. # To avoid potentially corrupting the format, please use the GUI to make # any setting changes and write a new theme file. # ------------------------------------------------------------------------------ # after idle { if { [info exists tk_version] } { # High-Level Settings menu main on # # state : inactive if { 0 } { menu main on ; menu main move 6 225 menu graphics off ; menu graphics move 395 500 menu tkcon off menu files off ; menu files move 125 325 menu apbsrun off menu autoimd off menu autoionize off menu autopsf off menu bendix off menu biocorechat off menu biocorelogin off menu biocorepubsync off menu biocoreutil off menu cggui off menu chirality_gui off menu cispeptide_gui off menu cliptool off menu clonerep off menu color off ; menu color move 125 225 menu colorscalebar off menu contactmap off menu dataimport off menu dipwatch off menu display off ; menu display move 395 30 menu dowser_gui off menu forcefieldtoolkit off menu gofrgui off menu hbonds off menu heatmapper off menu ilstools off menu imd off menu inorganicbuilder off menu irspecgui off menu labels off ; menu labels move 125 525 menu material off menu membrane off menu mergestructs off menu molefacture off menu multimolanim off menu multiseq off menu multitext off menu mutator off menu namdenergy off menu namdgui off menu namdplot off menu nanotube off menu navfly off menu navigate off menu networkview off menu nmwiz off menu palettetool off menu parsefep off menu pdbtool off menu plumed off menu pmepot off menu propka off menu qmtool off menu ramaplot off menu remote off menu render off ; menu render move 125 525 menu rmsd off menu rmsdtt off menu rmsdvt off menu ruler off menu saltbr off menu save off menu sequence off menu solvate off menu symmetrytool off menu timeline off menu tool off menu vdna off menu viewchangerender_gui off menu viewmaster off menu vmdmovie off menu vmdprefs off menu volmap off } # # # state : active if { 1 } { display reposition 100 600 display resize 512 512 display projection Orthographic display depthcue off display cuemode Exp2 display cuestart 0.50 display cueend 10.00 display cuedensity 0.32 display eyesep 0.07 display focalLength 2.00 display height 6.00 display distance -2.00 display culling off display fps off display stereoswap off display cachemode Off display rendermode Normal display shadows off display ambientocclusion off display aoambient 0.80 display aodirect 0.30 display stereo "Off" display nearclip set 0.0 display farclip set 10.00 display backgroundgradient off axes location Off light 0 on light 1 on light 2 off light 3 off } # # # state (assign) : active if { 1 } { color add item Display Background white color Display Background white color add item Display BackgroundTop black color Display BackgroundTop black color add item Display BackgroundBot blue2 color Display BackgroundBot blue2 color add item Display Foreground white color Display Foreground white color add item Display FPS white color Display FPS white color add item Axes X red color Axes X red color add item Axes Y green color Axes Y green color add item Axes Z blue color Axes Z blue color add item Axes Origin cyan color Axes Origin cyan color add item Axes Labels white color Axes Labels white color add item Name H white color Name H white color add item Name O red color Name O red color add item Name N blue color Name N blue color add item Name C silver color Name C silver color add item Name S yellow color Name S yellow color add item Name P tan color Name P tan color add item Name Z silver color Name Z silver color add item Name LPA green color Name LPA green color add item Name LPB green color Name LPB green color add item Type H white color Type H white color add item Type O red color Type O red color add item Type N blue color Type N blue color add item Type C silver color Type C silver color add item Type S yellow color Type S yellow color add item Type P tan color Type P tan color add item Type Z silver color Type Z silver color add item Type LP green color Type LP green color add item Type DRUD pink color Type DRUD pink color add item Element X cyan color Element X cyan color add item Element Ac ochre color Element Ac ochre color add item Element Ag ochre color Element Ag ochre color add item Element Al ochre color Element Al ochre color add item Element Am ochre color Element Am ochre color add item Element Ar ochre color Element Ar ochre color add item Element As ochre color Element As ochre color add item Element At ochre color Element At ochre color add item Element Au ochre color Element Au ochre color add item Element B ochre color Element B ochre color add item Element Ba ochre color Element Ba ochre color add item Element Be ochre color Element Be ochre color add item Element Bh ochre color Element Bh ochre color add item Element Bi ochre color Element Bi ochre color add item Element Bk ochre color Element Bk ochre color add item Element Br ochre color Element Br ochre color add item Element C silver color Element C silver color add item Element Ca ochre color Element Ca ochre color add item Element Cd ochre color Element Cd ochre color add item Element Ce ochre color Element Ce ochre color add item Element Cf ochre color Element Cf ochre color add item Element Cl ochre color Element Cl ochre color add item Element Cm ochre color Element Cm ochre color add item Element Co ochre color Element Co ochre color add item Element Cr ochre color Element Cr ochre color add item Element Cs ochre color Element Cs ochre color add item Element Cu ochre color Element Cu ochre color add item Element Db ochre color Element Db ochre color add item Element Ds ochre color Element Ds ochre color add item Element Dy ochre color Element Dy ochre color add item Element Er ochre color Element Er ochre color add item Element Es ochre color Element Es ochre color add item Element Eu ochre color Element Eu ochre color add item Element F ochre color Element F ochre color add item Element Fe ochre color Element Fe ochre color add item Element Fm ochre color Element Fm ochre color add item Element Fr ochre color Element Fr ochre color add item Element Ga ochre color Element Ga ochre color add item Element Gd ochre color Element Gd ochre color add item Element Ge ochre color Element Ge ochre color add item Element H white color Element H white color add item Element He ochre color Element He ochre color add item Element Hf ochre color Element Hf ochre color add item Element Hg ochre color Element Hg ochre color add item Element Ho ochre color Element Ho ochre color add item Element Hs ochre color Element Hs ochre color add item Element I ochre color Element I ochre color add item Element In ochre color Element In ochre color add item Element Ir ochre color Element Ir ochre color add item Element K ochre color Element K ochre color add item Element Kr ochre color Element Kr ochre color add item Element La ochre color Element La ochre color add item Element Li ochre color Element Li ochre color add item Element Lr ochre color Element Lr ochre color add item Element Lu ochre color Element Lu ochre color add item Element Md ochre color Element Md ochre color add item Element Mg ochre color Element Mg ochre color add item Element Mn ochre color Element Mn ochre color add item Element Mo ochre color Element Mo ochre color add item Element Mt ochre color Element Mt ochre color add item Element N blue color Element N blue color add item Element Na ochre color Element Na ochre color add item Element Nb ochre color Element Nb ochre color add item Element Nd ochre color Element Nd ochre color add item Element Ne ochre color Element Ne ochre color add item Element Ni ochre color Element Ni ochre color add item Element No ochre color Element No ochre color add item Element Np ochre color Element Np ochre color add item Element O red color Element O red color add item Element Os ochre color Element Os ochre color add item Element P tan color Element P tan color add item Element Pa ochre color Element Pa ochre color add item Element Pb ochre color Element Pb ochre color add item Element Pd ochre color Element Pd ochre color add item Element Pm ochre color Element Pm ochre color add item Element Po ochre color Element Po ochre color add item Element Pr ochre color Element Pr ochre color add item Element Pt ochre color Element Pt ochre color add item Element Pu ochre color Element Pu ochre color add item Element Ra ochre color Element Ra ochre color add item Element Rb ochre color Element Rb ochre color add item Element Re ochre color Element Re ochre color add item Element Rf ochre color Element Rf ochre color add item Element Rg ochre color Element Rg ochre color add item Element Rh ochre color Element Rh ochre color add item Element Rn ochre color Element Rn ochre color add item Element Ru ochre color Element Ru ochre color add item Element S yellow color Element S yellow color add item Element Sb ochre color Element Sb ochre color add item Element Sc ochre color Element Sc ochre color add item Element Se ochre color Element Se ochre color add item Element Sg ochre color Element Sg ochre color add item Element Si ochre color Element Si ochre color add item Element Sm ochre color Element Sm ochre color add item Element Sn ochre color Element Sn ochre color add item Element Sr ochre color Element Sr ochre color add item Element Ta ochre color Element Ta ochre color add item Element Tb ochre color Element Tb ochre color add item Element Tc ochre color Element Tc ochre color add item Element Te ochre color Element Te ochre color add item Element Th ochre color Element Th ochre color add item Element Ti ochre color Element Ti ochre color add item Element Tl ochre color Element Tl ochre color add item Element Tm ochre color Element Tm ochre color add item Element U ochre color Element U ochre color add item Element V ochre color Element V ochre color add item Element W ochre color Element W ochre color add item Element Xe ochre color Element Xe ochre color add item Element Y ochre color Element Y ochre color add item Element Yb ochre color Element Yb ochre color add item Element Zn silver color Element Zn silver color add item Element Zr ochre color Element Zr ochre color add item Resname ALA blue color Resname ALA blue color add item Resname ARG white color Resname ARG white color add item Resname ASN tan color Resname ASN tan color add item Resname ASP red color Resname ASP red color add item Resname CYS yellow color Resname CYS yellow color add item Resname GLY white color Resname GLY white color add item Resname GLU pink color Resname GLU pink color add item Resname GLN orange color Resname GLN orange color add item Resname HIS cyan color Resname HIS cyan color add item Resname ILE green color Resname ILE green color add item Resname LEU pink color Resname LEU pink color add item Resname LYS cyan color Resname LYS cyan color add item Resname MET yellow color Resname MET yellow color add item Resname PHE purple color Resname PHE purple color add item Resname PRO ochre color Resname PRO ochre color add item Resname SER yellow color Resname SER yellow color add item Resname THR mauve color Resname THR mauve color add item Resname TRP silver color Resname TRP silver color add item Resname TYR green color Resname TYR green color add item Resname VAL tan color Resname VAL tan color add item Resname ADE blue color Resname ADE blue color add item Resname CYT orange color Resname CYT orange color add item Resname GUA yellow color Resname GUA yellow color add item Resname THY purple color Resname THY purple color add item Resname URA green color Resname URA green color add item Resname TIP cyan color Resname TIP cyan color add item Resname TIP3 cyan color Resname TIP3 cyan color add item Resname WAT cyan color Resname WAT cyan color add item Resname SOL cyan color Resname SOL cyan color add item Resname H2O cyan color Resname H2O cyan color add item Resname LYR purple color Resname LYR purple color add item Resname ZN silver color Resname ZN silver color add item Resname NA yellow color Resname NA yellow color add item Resname CL green color Resname CL green color add item Resname HSE cyan color Resname HSE cyan color add item Resname HSD cyan color Resname HSD cyan color add item Resname HSP cyan color Resname HSP cyan color add item Resname CYX yellow color Resname CYX yellow color add item Restype Unassigned cyan color Restype Unassigned cyan color add item Restype Solvent yellow color Restype Solvent yellow color add item Restype Nucleic_Acid purple color Restype Nucleic_Acid purple color add item Restype Basic blue color Restype Basic blue color add item Restype Acidic red color Restype Acidic red color add item Restype Polar green color Restype Polar green color add item Restype Nonpolar white color Restype Nonpolar white color add item Restype Ion tan color Restype Ion tan color add item Highlight Proback green color Highlight Proback green color add item Highlight Nucback yellow color Highlight Nucback yellow color add item Highlight Nonback blue color Highlight Nonback blue color add item Structure {Alpha Helix} purple color Structure {Alpha Helix} purple color add item Structure 3_10_Helix blue color Structure 3_10_Helix blue color add item Structure Pi_Helix red color Structure Pi_Helix red color add item Structure Extended_Beta yellow color Structure Extended_Beta yellow color add item Structure Bridge_Beta tan color Structure Bridge_Beta tan color add item Structure Turn cyan color Structure Turn cyan color add item Structure Coil white color Structure Coil white color add item Surface Grasp gray color Surface Grasp gray color add item Labels Atoms green color Labels Atoms green color add item Labels Bonds white color Labels Bonds white color add item Labels Angles yellow color Labels Angles yellow color add item Labels Dihedrals cyan color Labels Dihedrals cyan color add item Labels Springs orange color Labels Springs orange color add item Stage Even gray color Stage Even gray color add item Stage Odd silver color Stage Odd silver } # state (define) : active if { 1 } { color change rgb blue 0.000 0.000 1.000 color change rgb red 1.000 0.000 0.000 color change rgb gray 0.350 0.350 0.350 color change rgb orange 1.000 0.500 0.000 color change rgb yellow 1.000 1.000 0.000 color change rgb tan 0.500 0.500 0.200 color change rgb silver 0.600 0.600 0.600 color change rgb green 0.000 1.000 0.000 color change rgb white 1.000 1.000 1.000 color change rgb pink 1.000 0.600 0.600 color change rgb cyan 0.250 0.750 0.750 color change rgb purple 0.650 0.000 0.650 color change rgb lime 0.500 0.900 0.400 color change rgb mauve 0.900 0.400 0.700 color change rgb ochre 0.500 0.300 0.000 color change rgb iceblue 0.500 0.500 0.750 color change rgb black 0.000 0.000 0.000 color change rgb yellow2 0.880 0.970 0.020 color change rgb yellow3 0.550 0.900 0.020 color change rgb green2 0.000 0.900 0.040 color change rgb green3 0.000 0.900 0.500 color change rgb cyan2 0.000 0.880 1.000 color change rgb cyan3 0.000 0.760 1.000 color change rgb blue2 0.020 0.380 0.670 color change rgb blue3 0.010 0.040 0.930 color change rgb violet 0.270 0.000 0.980 color change rgb violet2 0.450 0.000 0.900 color change rgb magenta 0.900 0.000 0.900 color change rgb magenta2 1.000 0.000 0.660 color change rgb red2 0.980 0.000 0.230 color change rgb red3 0.810 0.000 0.000 color change rgb orange2 0.890 0.350 0.000 color change rgb orange3 0.960 0.720 0.000 } # state (scale) : active if { 1 } { color scale method BGR color scale midpoint 0.50 color scale min 0.10 } # # # state : active if { 1 } { mol default color Name mol default material Diffuse mol default style Lines mol default selection {noh} } # # # state : inactive if { 0 } { set matsVMD [material list] set matsVMDPREFS {Opaque Transparent BrushedMetal Diffuse Ghost Glass1 Glass2 Glass3 Glossy HardPlastic MetallicPastel Steel Translucent Edgy EdgyShiny EdgyGlass Goodsell AOShiny AOChalky AOEdgy BlownGlass GlassBubble} # deletions foreach ele $matsVMD { if { [lsearch $matsVMDPREFS $ele] == -1 } { material delete $ele } } # additions foreach ele $matsVMDPREFS { if { [lsearch $matsVMD GlassBubble] == -1 } { material add $ele } } # set/change properties set properties {ambient diffuse specular shininess opacity outline outlinewidth transmode} foreach ele { {Opaque 0.000 0.650 0.500 0.534 1.000 0.000 0.000 0.000} {Transparent 0.000 0.650 0.500 0.534 0.300 0.000 0.000 0.000} {BrushedMetal 0.080 0.390 0.340 0.150 1.000 0.000 0.000 0.000} {Diffuse 0.000 0.620 0.000 0.530 1.000 0.000 0.000 0.000} {Ghost 0.000 0.000 1.000 0.230 0.100 0.000 0.000 0.000} {Glass1 0.000 0.500 0.650 0.530 0.150 0.000 0.000 0.000} {Glass2 0.520 0.760 0.220 0.590 0.680 0.000 0.000 0.000} {Glass3 0.150 0.250 0.750 0.800 0.500 0.000 0.000 0.000} {Glossy 0.000 0.650 1.000 0.880 1.000 0.000 0.000 0.000} {HardPlastic 0.000 0.560 0.280 0.690 1.000 0.000 0.000 0.000} {MetallicPastel 0.000 0.260 0.550 0.190 1.000 0.000 0.000 0.000} {Steel 0.250 0.000 0.380 0.320 1.000 0.000 0.000 0.000} {Translucent 0.000 0.700 0.600 0.300 0.800 0.000 0.000 0.000} {Edgy 0.000 0.660 0.000 0.750 1.000 0.620 0.940 0.000} {EdgyShiny 0.000 0.660 0.960 0.750 1.000 0.760 0.940 0.000} {EdgyGlass 0.000 0.660 0.500 0.750 0.620 0.620 0.940 0.000} {Goodsell 0.520 1.000 0.000 0.000 1.000 4.000 0.900 0.000} {AOShiny 0.000 0.850 0.200 0.530 1.000 0.000 0.000 0.000} {AOChalky 0.000 0.850 0.000 0.530 1.000 0.000 0.000 0.000} {AOEdgy 0.000 0.900 0.200 0.530 1.000 0.620 0.930 0.000} {BlownGlass 0.040 0.340 1.000 1.000 0.100 0.000 0.000 1.000} {GlassBubble 0.250 0.340 1.000 1.000 0.040 0.000 0.000 1.000} } { set i 1 foreach prop $properties { material change $prop [lindex $ele 0] [lindex $ele $i]; incr i } unset i } } # } # # state : active if { 0 } { } # } # End Theme File