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From: Armen Nalian (nalianarmen_at_sfasu.edu)
Date: Fri May 18 2007 - 12:29:41 CDT
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I was wondering what additional parameters are required for blast in multiseq. In multiseq blast against uniprot_sprot works fine, but when I select myDB, blast fails.
Thank you,
Armen
John Eargle wrote:
It depends on how your sequence data is formatted. Help with formatdb is available here: http://web.csb.ias.edu/blast/formatdb.txt ~John Eargle ---- Original message ----Date: Thu, 17 May 2007 18:48:01 -0500 From: Armen Nalian <nalianarmen@sfasu.edu> Subject: vmd-l: custom db in Multiseq To: vmd-l@ks.uiuc.edu Hello, I would like to use a custom database for blast search in Multiseq. How can I format a sequence file? What arguments are required for formatdb? Thank you, Armen
--
Armen Nalian
Armen Nalian
Research Associate Department of Biotechnology Stephen F. Austin State University E-mail: nalianarmen@sfasu.edu Tel: 936-468-6931 Cell: 936-615-2563 Science Research Center P.O Box 6132-SFA Station Nacogdoches, Texas 75962-3006
- Next message: John Eargle: "Re: custom db in Multiseq"
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