VMD-L Mailing List

From: li19104 (li19104_at_yahoo.com)
Date: Tue Jan 23 2007 - 10:27:33 CST

Thank JC and Axel very much for the kind help. It makes perfect sense that there may be already revisions. I tried "puts $hinge_ref_id" and I got the same "no such variable" error message.

The version I used is file "hingefind.tcl" at http://biomachina.org/disseminate/hingefind/. Could you make the new updated version available to me?

Many thanks.

Wendy

JC Gumbart <gumbart_at_ks.uiuc.edu> wrote: After you type load, does it actually load the pdbs to compare? Try typing the following in VMD after you run load:

puts $hinge_ref_id

If it gives the same error, something is wrong with the script then as load should set that variable to -1. If this is the case, please include the script you used with your next email.

On Jan 22, 2007, at 6:54 PM, Shirley Li wrote:

Dear VMD experts,

I was trying to use the "hingefind" feature available in VMD. When following the instruction at http://biomachina.org/disseminate/hingefind/hingefind_tcl.html, "source hingefind.tcl" and "load" worked fine. While when I type "partition 2.0", I got the following error message:
    can't read "hinge_ref_id": no such variable
Could sb make some comments on this?

Many thanks.

Wendy.

  

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