VMD-L Mailing List
From: ziemys_at_ecr6.ohio-state.edu
Date: Tue Jun 20 2006 - 15:33:32 CDT
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HI,
Is RMSF in VMD computed as in GROMACS (the root mean square standard deviation of atomic positions after first fitting to a reference frame) ?
What frame is the reference for fitting (if RMSF calculated like in GROMACS) ?
Will the average computed RMSF of all atoms in a residue be the same as a group RMSF ?
With best
Arturas
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