VMD-L Mailing List

From: Mengjuei Hsieh (mjhsieh_at_gmail.com)
Date: Thu Dec 01 2005 - 17:10:03 CST

Hi
I was testing the Grd plugin and trying to see if it works on delphibinary map. My VMD was able to read the file and show the correctdimension. However when I was using the volume as coloring method, itgives me gray color in my linux, partial green in my Mac, dark gray ina windows machine.
The PDB I was testing is thishttp://pdbbeta.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId=1HVRand my phi map is in http://apple.sysbio.info/~mjhsieh/files/1hvr_emap.phi
It works correctly with pymol so maybe that can prove my binary map isnot bogus.
Any idea?
--Mengjuei