VMD-L Mailing List

From: Samuel Flores (samuel.flores_at_yale.edu)
Date: Wed Oct 12 2005 - 16:12:26 CDT

Hi Guys,

I have a puzzling error that perhaps someone can help with.

I am trying to read a protein (with solvent) from a pdb file called
input.pdb and write it, without solvent, to a file called inputp.pdb. I
tried the following:

mol load pdb input.pdb
set preprot [atomselect 0 protein]
$preprot writepdb inputp.pdb
 
When I go to view inputp.pdb, there is an odd problem: The last residue has
been truncated! No matter what protein I give it, it always chops off the
last residue. Why is this happening?

Sam

-----Original Message-----
From: owner-vmd-l_at_ks.uiuc.edu [mailto:owner-vmd-l_at_ks.uiuc.edu] On Behalf Of
Mingliang Tan
Sent: Wednesday, October 12, 2005 1:59 PM
To: vmd-l_at_ks.uiuc.edu
Subject: vmd-l: Show a movie from one static structure to another in VMD?

Dear all,

I would like to know how to show a movie from one static configuration
(pdb file available) of a protein to another (pdb file available too),
i.e., is there any way to have a movie showing the intermediate
structures in VMD?

Thank you very much in advance,

Mingliang