From: peter.schellenberg_at_ipht-jena.de
Date: Sun Jul 10 2005 - 05:59:27 CDT

Hi Chris,

you may check the script Pickbond.tcl from Justin Gullingsrud in
VMD script library, there are subroutines which may be useful for
your purpose, and that you can include into your tcl -script, in
particular

 proc addbond { molid atom1 atom2} ......

Kind regards Peter