VMD-L Mailing List

From: Jim Phillips (jim_at_ks.uiuc.edu)
Date: Tue Apr 12 2005 - 13:02:10 CDT

There's nothing special. Just create a normal patch to create a normal
bond. NAMD will use the nearest image atoms when evaluating forces.

-Jim

On Tue, 12 Apr 2005, Glenn Johnson wrote:

> Is there a way to specify a bond between an atom of the primary box and
> an atom in an image box with psfgen? I want to bond the end of a
> polymer chain to the beginning of its image along one axis of the box.
>
> I want to be able to do what can be done with the
> CHARMM image facility described in the following URL:
>
> http://www.charmm.org/no_frames/document/Charmm/c31b2/images.html#%20Patching
>
> Thanks.
>
> --
> Glenn Johnson <gjohnson_at_srrc.ars.usda.gov>
> U. S. Department of Agriculture
>