VMD-L Mailing List

From: vivek sharma (vivek.sharma_at_helsinki.fi)
Date: Wed Feb 09 2005 - 23:50:37 CST

John,

I have pasted the details which appear in console when I go through the
VMD Main->File->Load state->(Browsing the file,etc).

And the same file of the state loads pretty well with 'play' command in
tkconsole.

Please have a look.

---------------Console output-------------
 'C:/Program Files/University of Illinois/VMD/plugins/WIN32/molfile'.
vmd > ERROR) Could not read file 1EHK.pdb
Unable to load file '1EHK.pdb' using file type 'pdb'.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol scaleminmax operates on one molecule only
ERROR) No molecules loaded.mol smoothrep operates on one molecule only
ERROR) No molecules loaded.mol drawframes operates on one molecule only
ERROR) No molecules loaded.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol scaleminmax operates on one molecule only
ERROR) No molecules loaded.mol smoothrep operates on one molecule only
ERROR) No molecules loaded.mol drawframes operates on one molecule only
ERROR) No molecules loaded.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol scaleminmax operates on one molecule only
ERROR) No molecules loaded.mol smoothrep operates on one molecule only
ERROR) No molecules loaded.mol drawframes operates on one molecule only
ERROR) No molecules loaded.mol operates on one molecule only.
{{1.000000 0.000000 0.000000 -90.711998} {0.000000 1.000000 0.000000 -
28.816000}
 {0.000000 0.000000 1.000000 3.223000} {0.000000 0.000000 0.000000
1.000000}} {{
0.112502 0.270406 -0.956146 0.000000} {-0.679399 0.723126 0.124566
0.000000} {0.
725095 0.635583 0.265062 0.000000} {0.000000 0.000000 0.000000 1.000000}}
{{0.04
1978 0.000000 0.000000 0.000000} {0.000000 0.041978 0.000000 0.000000}
{0.000000
 0.000000 0.041978 0.000000} {0.000000 0.000000 0.000000 1.000000}}
{{1.000000 0
.000000 0.000000 0.327072} {0.000000 1.000000 0.000000 0.120016} {0.000000
0.000
000 1.000000 -3.077799} {0.000000 0.000000 0.000000 1.000000}}
-1
ERROR) Could not read file 1V54.pdb
Unable to load file '1V54.pdb' using file type 'pdb'.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol scaleminmax operates on one molecule only
ERROR) No molecules loaded.mol smoothrep operates on one molecule only
ERROR) No molecules loaded.mol drawframes operates on one molecule only
ERROR) No molecules loaded.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol operates on one molecule only.
ERROR) No molecules loaded.mol scaleminmax operates on one molecule only
ERROR) No molecules loaded.mol smoothrep operates on one molecule only
ERROR) No molecules loaded.mol drawframes operates on one molecule only
ERROR) No molecules loaded.mol operates on one molecule only.
molinfo: set: no molecule exists with id -1
{{1.000000 0.000000 0.000000 -90.711998} {0.000000 1.000000 0.000000 -
28.816000}
 {0.000000 0.000000 1.000000 3.223000} {0.000000 0.000000 0.000000
1.000000}} {{
0.112502 0.270406 -0.956146 0.000000} {-0.679399 0.723126 0.124566
0.000000} {0.
725095 0.635583 0.265062 0.000000} {0.000000 0.000000 0.000000 1.000000}}
{{0.04
1978 0.000000 0.000000 0.000000} {0.000000 0.041978 0.000000 0.000000}
{0.000000
 0.000000 0.041978 0.000000} {0.000000 0.000000 0.000000 1.000000}}
{{1.000000 0
.000000 0.000000 0.327072} {0.000000 1.000000 0.000000 0.120016} {0.000000
0.000
000 1.000000 -3.077799} {0.000000 0.000000 0.000000 1.000000}}
-1 -1
-1
molinfo: set: no molecule exists with id -1
ERROR) No molecules loaded.mol operates on one molecule only.
Unable to change color name
----------------------------------------------------

Thanks and regards,

Vivek

Quoting John Stone <johns_at_ks.uiuc.edu>:

>
> Vivek,
> Can you email me the exact error you're getting?
> If it loads from play but not from the GUI, then this is a
> different problem from the one reported in that previous VMD-L
> message.
>
> Thanks,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Feb 09, 2005 at 02:57:43PM +0200, vivek sharma wrote:
> > Dear John,
> >
> > Please see.
> > http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/1458.html
> >
> > I am using VMD 1.8.3b1 on Windows and I encountered same problem.
> > State is not loaded when I load it from VMD MAin->Load State and ends
> with
> > similar error mentioned above in link, but it loads from 'play' command
> in
> > console. Is there some problem in 1.8.3b1?
> >
> > regards,
> >
> > vivek
> >
> > --
> > VIVEK SHARMA
> > HBG BI
> > "You must be the change you wish to see in the world."
> > MKG
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
>
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> 

-- 
VIVEK SHARMA
HBG BI
"You must be the change you wish to see in the world."
                                                   MKG