VMD-L Mailing List

From: Anna Modzelewska (amodzelewska_at_iimcb.gov.pl)
Date: Thu Sep 30 2004 - 04:18:38 CDT

Bora,
we had a similar problem with VMD1.8.2 on WindowsXP. It didn't add water and
ions, probably this version of psfgen works uncorrectly. We moved the
"autoionize" script from VMD1.8.2 to VMD1.8.1 and it works. You may also
try to replace the psfgen in VMD1.8.2 by an older version of this plugin.
Good luck
Anna

----- Original Message -----
From: "bora erdemli" <boraerdemli_at_yahoo.com>
To: "John Stone" <johns_at_ks.uiuc.edu>
Cc: <vmd-l_at_ks.uiuc.edu>
Sent: Thursday, September 30, 2004 8:38 AM
Subject: Re: vmd-l: problem in autoionize

>
>
>
> John,
>
> I have tried it both on Linux machine(version LINUX
> OpenGL ,Linux with Mesa or hardware OpenGL) and
> Windows version(Windows OpenGL ,Microsoft Windows
> 2000/XP using OpenGL). However, I came across with
> the same problem. Could it be because of my psf and
> pdb file that I generate by using psfgen?
>
> thank you in advance
>
>
>
>
>
>
>
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