VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Sep 01 2004 - 13:14:24 CDT

Hi,
  Do your XYZ files follow the XYZ file format specification
on the VMD plugin web site?:
  http://www.ks.uiuc.edu/Research/vmd/plugins/molfile/xyzplugin.html

What simulation software are you using?

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Sep 01, 2004 at 10:50:06AM -0700, pinisetty dinesh wrote:
> Hello everybody,
>
> My simulation results generates data-sets with XYZ
> coordinates in rela format. I am trying to load XYZ
> file in VMD to view them but there seem to be some
> trouble. The main window of VMD says : "init_atom
> cannot find number of valid atoms". The other error
> messages are : "the number of atoms could not be
> determined" " first load struture file and then try
> agin"
>
> Can somebody tell me how to go ahead with it.
>
> Thank You
>
> -Dinesh
>
>
>
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-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078