From: Vermaas, Joshua (Joshua.Vermaas_at_nrel.gov)
Date: Fri May 24 2019 - 07:52:55 CDT

One segment at a time would be my advice. That's how the psfgen user guide does it (see page 4, where the protein BPTI is in a different segment than the water).

-Josh

On 2019-05-24 00:56:17-06:00 owner-vmd-l_at_ks.uiuc.edu wrote:

Dear VMD Users

I have a question about how to apply psfgen to a complex with many segments