VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jul 05 2004 - 14:16:13 CDT
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- In reply to: Travis DePuy: "CONECT in pdb files"
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Travis,
The CONECT record feature didn't get implemented in the released
plugins yet, but I hope to release new plugins which include this
and other new features soon after I'm able to compile on all of our
build machines again. I expect to be able to do that in a few weeks
if all goes well. I'm not sure what platform you're using, but we also
have an ancient program one of the other developers wrote a long time ago
that converts PDB CONECT records to a PSF if you happen to be using an SGI:
http://www.ks.uiuc.edu/Development/MDTools/conect2psf/
If you tell me what platform you're using and you're lucky, I might
be able to give you a plugin sooner than when we get the rest of the
build boxes working again...
Thanks,
John Stone
vmd_at_ks.uiuc.edu
On Fri, Jul 02, 2004 at 12:45:10PM -0700, Travis DePuy wrote:
> Hi all!
>
> I found this posting from last Oct.:
> www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/2005.html
>
> it mentions that there were plans to
> impliment CONECT in the pdb reader in
> VMD 1.8.2. Did it make it in? if so
> any ideas why I can't seem to get it
> to work? It is simply:
> 1 2
> 12345678901234567890
> CONECT 2345 345
> Yes?
>
> Is there anyother way to explicitly make
> bonds?
> I have seen tidbits about psf files, but
> where can I find the format/language desc
> info?
>
> Thanks much
> Travis
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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