VMD-L Mailing List

From: Mithun Mitra (mitkumit_at_yahoo.co.in)
Date: Tue Apr 27 2004 - 10:17:00 CDT

Hi,
  I am new user of NAMD and VMD and I have some
problems while working with a protein which contains
the HETEROATOMS GTP, GDP and TXL. I would be very
grateful if anybody can help me out.

My questions are:
1> Does anybody have the CHARMM format topology and
parameter files for GTP, GDP and TXL?
2> Is it possible to convert a XPLOR format topology
file to a CHARMM format topology file?
3> While using psfgen, can I use two topology files (
as in the protein topology file and the HETATM
topology file ) together?

Thanks in advance for any help.

Mithun.

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