VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Oct 31 2003 - 09:45:07 CST

Jerome,
  The best method is to use the 'sscache' script in the VMD script library:
http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/sscache/

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Oct 31, 2003 at 02:37:31PM +0100, Jérôme Hénin wrote:
> Hi all,
>
> How can I tell VMD to recalculate (using STRIDE) the secondary structure of a
> protein for every frame of a trajectory?
>
> Thanks
> --
> Jérôme Hénin
> Equipe Dynamique des Assemblages Membranaires
> Université Henri Poincaré / CNRS UMR 7565
> B.P. 239 54506 Vandoeuvre-lès-Nancy Cedex
> Tel : (33) 3 83 68 43 95 Fax : (33) 3 83 68 43 71
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078