VMD-L Mailing List

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Tue Nov 26 2002 - 07:24:59 CST

Dear vmd users,
    There is a funny behaviour of all the vmd 1.8 versions when loading
amber parameter and coordinate files.
The VMD program is skipping the bond between the last two atoms so that
for instance an H3' end hydrogen of an RNA strand remains "in the air"
   This does not happen with vmd 1.7.1.
   The parameter files are generated with amber6
I know this is not something very very important but maybe somebody can
take a look at it.
Best wishes,
vlad 

-- 
Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204