VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jun 25 2002 - 15:00:36 CDT

Hi,
  I believe that your problem may be a bug in the older version
of our Gromacs trajectory reading code, from the way you desribed it....
Can you try doing this with the new VMD 1.8 alpha 16 version and let us
know if you still encounter the same problems?

Yes, you can save a PDB file of a particular frame from your trajectory.
This is done within the "edit" menu in the old versions of VMD, and
from the "save trajectory" menu in the new 1.8 alpha versions of VMD.

Let us know if you need more help with this. Sorry for the delayed
reply, I've been swamped with email. :)

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Sat, Jun 22, 2002 at 10:33:46AM +0530, Y U Sasidhar wrote:
> I use vmd_1.72 to visualize gromacs md trajectory using "animate".
> 1. Frequently the image jumps between edges and goes out of visible
> screen window.
> How do I avoid this ? ( centering in a frame also does not work ).
> How can I have image always in field of view so that I can view
> trajectory completely without "interruptions".
>
> 2. Can save pdb file of a particular frame number ?
>
> Sasidhar
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
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