VMD-L Mailing List
From: Johannes von Langen (langen_at_imb-jena.de)
Date: Tue Jun 11 2002 - 03:57:29 CDT
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Hi Raik,
I made a little different experience:
delete just the last line (the one with the box infos) in the restart
file *.rst
on vmd-1.8 you have to do the same, but you also have to delete the
second frame! ("Delete Timestep")
John
>Le Mardi 4 Juin 2002 11:08, Raik Grunberg a écrit :
>> Hi VMDevelopers,
>>
>> perhaps I stumbled accross a small bug here:
>>
>> in previous vmd versions one could use the "parm and crd" file filter to
>> display both amber 6 trajectories and restart files. Vmd 1.7.1 still
>> handles amber6-generated trajectories (i.e. topology and crd file) without
>> problems but something goes wrong when opening restart files (parm and
>> rst). The atoms are there but the connectivity is wrong.
>>
>> Best regards!
>> Raik
>>
>
>You need to :
>1 - remove the first line of the parm file
>or
>2 - create your trajectory with the option nobox in ptraj.
>
>Stef
-- Johannes von Langen langen_at_imb-jena.de Institut fuer Molekulare Biotechnologie Beutenbergstrasse 11, Jena Tel.: +49-3641-65-6213 Postfach 100 813, D-07708 Jena, Germany Fax: +49-3641-65-6210
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- Maybe in reply to: Raik Grunberg: "problem with amber 6 restart files (parm and rst)"
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