VMD-L Mailing List

From: B. Bennion (bbennion_at_u.washington.edu)
Date: Tue Aug 29 2000 - 10:49:16 CDT

Hi,
I have used the hbond option in the graphics form to display hydrogen
bonds and like the ability to change bond distance and angle. It took me
a few moments to realize that the distance restraint is based on the
oxygen-oxygen distance though. My question(s)

Is there a way to get a listing of all the hbonds that were found?

And, is it possible to calculate and count hbonds that are formed on the
edges of a periodic box?

Brian Bennion

Graduate Research Assistant
Dep. Medicinal Chemistry, University of Washington
Tel# (206)616-2779
BOX 357610 Seattle WA 98195

email--bbennion_at_u.washington.edu
web page--http://students.washington.edu/bbennion