| accelMD_enabled() const | colvarproxy_system | [inline, virtual] |
| add_energy(cvm::real energy) | colvarproxy_system | [virtual] |
| angstrom_to_internal(cvm::real l) const | colvarproxy_system | [inline] |
| angstrom_value_ | colvarproxy_system | [protected] |
| apply_force_dE_dlambda(cvm::real *force) | colvarproxy_system | [virtual] |
| boltzmann() const | colvarproxy_system | [inline] |
| boltzmann_ | colvarproxy_system | [protected] |
| boundaries_non_periodic enum value | colvarproxy_system | [protected] |
| boundaries_pbc_ortho enum value | colvarproxy_system | [protected] |
| boundaries_pbc_triclinic enum value | colvarproxy_system | [protected] |
| boundaries_type | colvarproxy_system | [protected] |
| Boundaries_type enum name | colvarproxy_system | [protected] |
| boundaries_unsupported enum value | colvarproxy_system | [protected] |
| cached_alch_lambda | colvarproxy_system | [protected] |
| cached_alch_lambda_changed | colvarproxy_system | [protected] |
| colvarproxy_system() | colvarproxy_system | |
| dt() | colvarproxy_system | [virtual] |
| get_accelMD_factor() const | colvarproxy_system | [inline, virtual] |
| get_alch_lambda(cvm::real *lambda) | colvarproxy_system | [virtual] |
| get_d2E_dlambda2(cvm::real *d2E_dlambda2) | colvarproxy_system | [virtual] |
| get_dE_dlambda(cvm::real *dE_dlambda) | colvarproxy_system | [virtual] |
| get_molid(int &molid) | colvarproxy_system | [virtual] |
| indirect_lambda_biasing_force | colvarproxy_system | |
| internal_to_angstrom(cvm::real l) const | colvarproxy_system | [inline] |
| kcal_mol_value_ | colvarproxy_system | [protected] |
| position_distance(cvm::atom_pos const &pos1, cvm::atom_pos const &pos2) const | colvarproxy_system | [virtual] |
| rand_gaussian(void) | colvarproxy_system | [virtual] |
| reciprocal_cell_x | colvarproxy_system | [protected] |
| reciprocal_cell_y | colvarproxy_system | [protected] |
| reciprocal_cell_z | colvarproxy_system | [protected] |
| request_total_force(bool yesno) | colvarproxy_system | [virtual] |
| reset_pbc_lattice() | colvarproxy_system | |
| send_alch_lambda() | colvarproxy_system | [virtual] |
| set_alch_lambda(cvm::real lambda) | colvarproxy_system | |
| set_target_temperature(cvm::real T) | colvarproxy_system | [virtual] |
| set_unit_system(std::string const &units, bool check_only) | colvarproxy_system | [virtual] |
| target_temperature() const | colvarproxy_system | [inline] |
| target_temperature_ | colvarproxy_system | [protected] |
| total_force_requested | colvarproxy_system | [protected] |
| total_forces_enabled() const | colvarproxy_system | [virtual] |
| total_forces_same_step() const | colvarproxy_system | [virtual] |
| unit_cell_x | colvarproxy_system | [protected] |
| unit_cell_y | colvarproxy_system | [protected] |
| unit_cell_z | colvarproxy_system | [protected] |
| units | colvarproxy_system | |
| update_pbc_lattice() | colvarproxy_system | |
| ~colvarproxy_system() | colvarproxy_system | [virtual] |
