From: Kodituwakku,Dimuthu Nirmani (dkodituwakku_at_ufl.edu)
Date: Sun Aug 30 2020 - 11:58:07 CDT
Peter,
Sorry I misread your reply. Version of VMD is 1.9.3.
Thank you,
Best,
Dimuthu
________________________________
From: Peter Freddolino <petefred_at_umich.edu>
Sent: Sunday, August 30, 2020 12:55 PM
To: <namd-l_at_ks.uiuc.edu> <namd-l_at_ks.uiuc.edu>; Kodituwakku,Dimuthu Nirmani <dkodituwakku_at_ufl.edu>
Subject: Re: namd-l: Error when using namdplot
[External Email]
Sorry, as I originally asked, version of *VMD*, not version of NAMD. The error that you describe comes from VMD, so if anyone is going to try to reproduce it, we need a version number.
On Sun, Aug 30, 2020 at 11:48 AM Kodituwakku,Dimuthu Nirmani <dkodituwakku_at_ufl.edu<mailto:dkodituwakku_at_ufl.edu>> wrote:
Peter,
Sorry about that. Version of NAMD is 2.1.3 and I have linked an example log file here.
Best,
Dimuthu
[https://outlook-1.cdn.office.net/assets/mail/file-icon/png/txt_16x16.png]prod9.log<https://urldefense.proofpoint.com/v2/url?u=https-3A__uflorida-2Dmy.sharepoint.com_-3Au-3A_g_personal_dkodituwakku-5Fufl-5Fedu_EeCNnrOlwd1PuFWeH-5FiSkPsB0EDKWf-5FTZ48uqSBFhmM8YQ-3Fe-3DTISlov&d=DwMFAg&c=OCIEmEwdEq_aNlsP4fF3gFqSN-E3mlr2t9JcDdfOZag&r=jUfnSyKkfkyVRBIUzlG1GSGGZAZGcznwr8YliSSCjPc&m=AU6MB81edUb0AuvQWTlqXzGrrlyb0CYwMjXnrLMvC70&s=U0oMrm9aTucg-SyX07hvknlO2EpvFcUAVtjWJ12WHcI&e=>
________________________________
From: Kodituwakku,Dimuthu Nirmani <dkodituwakku_at_ufl.edu<mailto:dkodituwakku_at_ufl.edu>>
Sent: Saturday, August 29, 2020 11:45 PM
To: NAMD list <namd-l_at_ks.uiuc.edu<mailto:namd-l_at_ks.uiuc.edu>>
Subject: Re: namd-l: Error when using namdplot
Peter,
Sorry about that. Version of NAMD is 2.1.3 and I have attached an example log file here.
Best,
Dimuthu
________________________________
From: Peter Freddolino <petefred_at_umich.edu<mailto:petefred_at_umich.edu>>
Sent: Saturday, August 29, 2020 11:26 PM
To: <namd-l_at_ks.uiuc.edu<mailto:namd-l_at_ks.uiuc.edu>> <namd-l_at_ks.uiuc.edu<mailto:namd-l_at_ks.uiuc.edu>>; Kodituwakku,Dimuthu Nirmani <dkodituwakku_at_ufl.edu<mailto:dkodituwakku_at_ufl.edu>>
Subject: Re: namd-l: Error when using namdplot
[External Email]
Would definitely help to indicate the version of VMD that you're using, and to give an example log file that you're trying to parse.
Best,
Peter
On Sat, Aug 29, 2020 at 8:15 PM Kodituwakku,Dimuthu Nirmani <dkodituwakku_at_ufl.edu<mailto:dkodituwakku_at_ufl.edu>> wrote:
Hi all,
I came across the following error when trying to use namdplot plug-in in VMD.
can't read "memunit": no such variable
can't read "memunit": no such variable
while executing
"switch -exact $memunit {
kB { set memscale 1.0 }
KB { set memscale 1.0 }
MB { set memscale 1024.0 }
GB { set memscale ..."
(procedure "namdparse" line 24)
invoked from within
"namdparse $namdlogfilename"
(procedure "::NAMDPlot::namdplot" line 9)
invoked from within
"::NAMDPlot::namdplot $logfile"
(procedure "::NAMDPlot::guiplot" line 64)
invoked from within
"::NAMDPlot::guiplot"
invoked from within
".namdplot.menubar.file.menu invoke active"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke active]"
(procedure "tk::MenuInvoke" line 50)
invoked from within
"tk::MenuInvoke .namdplot.menubar.file.menu 1"
(command bound to event)
Thanks alot !
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