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File List
Here is a list of all files with brief descriptions:
Alg7.h
AlgNbor.C
AlgNbor.h
AlgRecBisection.C
AlgRecBisection.h
AlgSeven.C
Array.h
AtomMap.C
AtomMap.h
AVXTileLists.C
AVXTileLists.h
AVXTiles.C
AVXTiles.h
AVXTilesKernel.C
AVXTilesKernel.h
BackEnd.C
BackEnd.h
BOCgroup.h
Box.h
BroadcastClient.C
BroadcastClient.h
BroadcastMgr.C
BroadcastMgr.h
BroadcastObject.h
Broadcasts.h
ccsinterface.C
ccsinterface.h
CollectionMaster.C
CollectionMaster.h
CollectionMgr.C
CollectionMgr.h
colvarproxy_namd.C
colvarproxy_namd.h
colvarproxy_namd_version.h
common.C
common.h
Communicate.C
Communicate.h
CompressPsf.C
CompressPsf.h
Compute.C
Compute.h
ComputeAngles.C
ComputeAngles.h
ComputeAngles.inl
ComputeAniso.C
ComputeAniso.h
ComputeAniso.inl
ComputeBondedCUDA.C
ComputeBondedCUDA.h
ComputeBondedCUDAKernel.cu
ComputeBondedCUDAKernel.h
ComputeBonds.C
ComputeBonds.h
ComputeBonds.inl
ComputeConsForce.C
ComputeConsForce.h
ComputeConsForceMsgs.C
ComputeConsForceMsgs.h
ComputeCrossterms.C
ComputeCrossterms.h
ComputeCUDAMgr.C
ComputeCUDAMgr.h
ComputeCylindricalBC.C
ComputeCylindricalBC.h
ComputeDihedrals.C
ComputeDihedrals.h
ComputeDihedrals.inl
ComputeDPME.C
ComputeDPME.h
ComputeDPMEMsgs.C
ComputeDPMEMsgs.h
ComputeDPMTA.C
ComputeDPMTA.h
ComputeEField.C
ComputeEField.h
ComputeEwald.C
ComputeEwald.h
ComputeExt.C
ComputeExt.h
ComputeFmmSerial.C
ComputeFmmSerial.h
ComputeFullDirect.C
ComputeFullDirect.h
ComputeFullDirectBase.h
ComputeGBIS.C
ComputeGBIS.inl
ComputeGBISCUDAKernel.h
ComputeGBISser.C
ComputeGBISser.h
ComputeGlobal.C
ComputeGlobal.h
ComputeGlobalMsgs.C
ComputeGlobalMsgs.h
ComputeGridForce.C
ComputeGridForce.h
ComputeGromacsPair.C
ComputeGromacsPair.h
ComputeGromacsPair.inl
ComputeHomePatch.C
ComputeHomePatch.h
ComputeHomePatches.C
ComputeHomePatches.h
ComputeHomeTuples.h
ComputeImpropers.C
ComputeImpropers.h
ComputeLCPO.C
ComputeLCPO.h
ComputeMap.C
ComputeMap.h
ComputeMgr.C
ComputeMgr.h
ComputeMoa.C
ComputeMoa.h
ComputeMsm.C
ComputeMsm.h
ComputeMsmMsa.C
ComputeMsmMsa.h
ComputeMsmSerial.C
ComputeMsmSerial.h
ComputeNonbondedAlch.h
ComputeNonbondedBase.h
ComputeNonbondedBase2.h
ComputeNonbondedBase2KNL.h
ComputeNonbondedCUDA.C
ComputeNonbondedCUDA.h
ComputeNonbondedCUDAExcl.C
ComputeNonbondedCUDAExcl.h
ComputeNonbondedCUDAExcl.inl
ComputeNonbondedCUDAKernel.cu
ComputeNonbondedCUDAKernel.h
ComputeNonbondedCUDAKernelBase.h
ComputeNonbondedFEP.C
ComputeNonbondedGo.C
ComputeNonbondedInl.h
ComputeNonbondedLES.C
ComputeNonbondedMIC.C
ComputeNonbondedMIC.h
ComputeNonbondedMICKernel.C
ComputeNonbondedMICKernel.h
ComputeNonbondedMICKernelBase.h
ComputeNonbondedMICKernelBase2.h
ComputeNonbondedMICKernelBase2_handcode_single.h
ComputeNonbondedMICKernelBase2_scalar.h
ComputeNonbondedPair.C
ComputeNonbondedPair.h
ComputeNonbondedPProf.C
ComputeNonbondedSelf.C
ComputeNonbondedSelf.h
ComputeNonbondedSplitting.h
ComputeNonbondedStd.C
ComputeNonbondedTabEnergies.C
ComputeNonbondedTI.C
ComputeNonbondedUtil.C
ComputeNonbondedUtil.h
ComputePatch.C
ComputePatch.h
ComputePatchPair.C
ComputePatchPair.h
ComputePme.C
ComputePme.h
ComputePmeCUDA.C
ComputePmeCUDA.h
ComputePmeCUDAKernel.cu
ComputePmeCUDAKernel.h
ComputePmeCUDAMgr.C
ComputePmeCUDAMgr.h
ComputeQM.C
ComputeQM.h
ComputeRestraints.C
ComputeRestraints.h
ComputeSelfTuples.h
ComputeSphericalBC.C
ComputeSphericalBC.h
ComputeStir.C
ComputeStir.h
ComputeTclBC.C
ComputeTclBC.h
ComputeThole.C
ComputeThole.h
ComputeThole.inl
ConfigList.C
ConfigList.h
Controller.C
Controller.h
CudaComputeGBISKernel.cu
CudaComputeGBISKernel.h
CudaComputeNonbonded.C
CudaComputeNonbonded.h
CudaComputeNonbondedKernel.cu
CudaComputeNonbondedKernel.h
CudaNonbondedTables.C
CudaNonbondedTables.h
CudaPmeSolver.C
CudaPmeSolver.h
CudaPmeSolverUtil.C
CudaPmeSolverUtil.h
CudaPmeSolverUtilKernel.cu
CudaPmeSolverUtilKernel.h
CudaTileListKernel.cu
CudaTileListKernel.h
CudaUtils.C
CudaUtils.h
DataExchanger.C
DataExchanger.h
DataStream.C
DataStream.h
dcdlib.C
dcdlib.h
Debug.h
DeviceCUDA.C
DeviceCUDA.h
DeviceCUDAkernel.cu
diffbinpdb.c
DumpBench.C
DumpBench.h
DumpBenchParams.h
dumpdcd.c
eabf.h
eabf1D.C
eabf1D.h
eabf2D.C
eabf2D.h
eabffunc.C
eabffunc.h
eabfTcl.C
elements.h
erf.C
fitrms.C
fitrms.h
fixdcd.c
flipbinpdb.c
flipdcd.c
FreeEnergyAssert.C
FreeEnergyAssert.h
FreeEnergyEnums.h
FreeEnergyGroup.C
FreeEnergyGroup.h
FreeEnergyLambda.C
FreeEnergyLambda.h
FreeEnergyLambdMgr.C
FreeEnergyLambdMgr.h
FreeEnergyMain.C
FreeEnergyParse.C
FreeEnergyParse.h
FreeEnergyRestrain.C
FreeEnergyRestrain.h
FreeEnergyRMgr.C
FreeEnergyRMgr.h
FreeEnergyVector.C
FreeEnergyVector.h
fstream_namd.C
fstream_namd.h
GlobalMaster.C
GlobalMaster.h
GlobalMasterColvars.h
GlobalMasterEasy.C
GlobalMasterEasy.h
GlobalMasterFreeEnergy.C
GlobalMasterFreeEnergy.h
GlobalMasterIMD.C
GlobalMasterIMD.h
GlobalMasterMisc.C
GlobalMasterMisc.h
GlobalMasterServer.C
GlobalMasterServer.h
GlobalMasterSMD.C
GlobalMasterSMD.h
GlobalMasterSymmetry.C
GlobalMasterSymmetry.h
GlobalMasterTcl.C
GlobalMasterTcl.h
GlobalMasterTest.C
GlobalMasterTest.h
GlobalMasterTMD.C
GlobalMasterTMD.h
GoMolecule.C
GridForceGrid.C
GridForceGrid.h
GridForceGrid.inl
GromacsTopFile.C
GromacsTopFile.h
heap.C
heap.h
HipDefines.h
HomePatch.C
HomePatch.h
HomePatchList.h
Hydrogen.h
imd.C
imd.h
IMDOutput.C
IMDOutput.h
InfoStream.C
InfoStream.h
largefiles.h
Lattice.h
LdbCoordinator.C
LdbCoordinator.h
LJTable.C
LJTable.h
loaddcd.c
main.C
main.h
mainfunc.C
MathArray.h
Matrix4.C
Matrix4.h
Matrix4Symmetry.C
Matrix4Symmetry.h
Measure.C
Measure.h
memusage.C
memusage.h
MGridforceParams.C
MGridforceParams.h
MigrateAtomsMsg.C
MigrateAtomsMsg.h
Migration.h
Molecule.C
Molecule.h
Molecule2.C
MoleculeQM.C
msm.c
msm.h
msm_defn.h
msm_longrng.c
msm_longrng_sprec.c
msm_setup.c
msm_shortrng.c
msm_shortrng_sprec.c
MsmMacros.h
MsmMap.h
MStream.C
MStream.h
NamdCentLB.C
NamdCentLB.h
NamdDummyLB.C
NamdDummyLB.h
NamdEventsProfiling.h
NamdHybridLB.C
NamdHybridLB.h
NamdOneTools.C
NamdOneTools.h
NamdState.C
NamdState.h
NamdTypes.h
Node.C
Node.h
ObjectArena.h
Output.C
Output.h
OwnerBox.h
packmsg.h
ParallelIOMgr.C
ParallelIOMgr.h
Parameters.C
Parameters.h
parm.C
parm.h
ParseOptions.C
ParseOptions.h
Patch.C
Patch.h
PatchMap.C
PatchMap.h
PatchMap.inl
PatchMgr.C
PatchMgr.h
PatchTypes.h
PDB.C
PDB.h
PDBData.C
PDBData.h
PluginIOMgr.C
PluginIOMgr.h
PmeBase.h
PmeBase.inl
PmeKSpace.C
PmeKSpace.h
PmeRealSpace.C
PmeRealSpace.h
PmeSolver.C
PmeSolver.h
PmeSolverUtil.h
Pointer.h
PressureProfile.h
Priorities.h
ProcessorPrivate.C
ProcessorPrivate.h
ProxyMgr.C
ProxyMgr.h
ProxyPatch.C
ProxyPatch.h
pub3dfft.C
pub3dfft.h
Random.h
ReadAmberParm.C
ReadAmberParm.h
Rebalancer.C
Rebalancer.h
RecBisection.C
RecBisection.h
ReductionMgr.C
ReductionMgr.h
RefineOnly.C
RefineOnly.h
RefineTorusLB.C
RefineTorusLB.h
ReserveArray.h
ResizeArray.h
ResizeArrayIter.h
ResizeArrayPrimIter.h
ResizeArrayRaw.h
ScriptTcl.C
ScriptTcl.h
Sequencer.C
Sequencer.h
Set.C
Set.h
Settle.C
Settle.h
SimParameters.C
SimParameters.h
SortableResizeArray.h
SortAtoms.C
SortAtoms.h
SortedArray.h
sortreplicas.c
strlib.C
strlib.h
structures.h
Sync.C
Sync.h
TclCommands.C
TclCommands.h
TclVec.C
Tensor.h
TestArray.C
TestArray.h
Thread.h
TorusLB.C
TorusLB.h
TupleTypesCUDA.h
UniqueSet.h
UniqueSetIter.h
UniqueSetRaw.h
UniqueSortedArray.h
varsizemsg.h
Vector.h
vmdsock.C
vmdsock.h
wkfutils.c
wkfutils.h
WorkDistrib.C
WorkDistrib.h
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