Alg7.h | |
AlgNbor.C | |
AlgNbor.h | |
AlgRecBisection.C | |
AlgRecBisection.h | |
AlgSeven.C | |
Array.h | |
AtomMap.C | |
AtomMap.h | |
AVXTileLists.C | |
AVXTileLists.h | |
AVXTiles.C | |
AVXTiles.h | |
AVXTilesKernel.C | |
AVXTilesKernel.h | |
BackEnd.C | |
BackEnd.h | |
BOCgroup.h | |
Box.h | |
BroadcastClient.C | |
BroadcastClient.h | |
BroadcastMgr.C | |
BroadcastMgr.h | |
BroadcastObject.h | |
Broadcasts.h | |
ccsinterface.C | |
ccsinterface.h | |
CollectionMaster.C | |
CollectionMaster.h | |
CollectionMgr.C | |
CollectionMgr.h | |
colvarproxy_namd.C | |
colvarproxy_namd.h | |
colvarproxy_namd_version.h | |
common.C | |
common.h | |
Communicate.C | |
Communicate.h | |
CompressPsf.C | |
CompressPsf.h | |
Compute.C | |
Compute.h | |
ComputeAngles.C | |
ComputeAngles.h | |
ComputeAngles.inl | |
ComputeAniso.C | |
ComputeAniso.h | |
ComputeAniso.inl | |
ComputeBondedCUDA.C | |
ComputeBondedCUDA.h | |
ComputeBondedCUDAKernel.cu | |
ComputeBondedCUDAKernel.h | |
ComputeBonds.C | |
ComputeBonds.h | |
ComputeBonds.inl | |
ComputeCOMCudaKernel.h | |
ComputeConsForce.C | |
ComputeConsForce.h | |
ComputeConsForceCUDA.C | |
ComputeConsForceCUDA.h | |
ComputeConsForceCUDAKernel.cu | |
ComputeConsForceCUDAKernel.h | |
ComputeConsForceMsgs.C | |
ComputeConsForceMsgs.h | |
ComputeCrossterms.C | |
ComputeCrossterms.h | |
ComputeCUDAMgr.C | |
ComputeCUDAMgr.h | |
ComputeCylindricalBC.C | |
ComputeCylindricalBC.h | |
ComputeDihedrals.C | |
ComputeDihedrals.h | |
ComputeDihedrals.inl | |
ComputeDPME.C | |
ComputeDPME.h | |
ComputeDPMEMsgs.C | |
ComputeDPMEMsgs.h | |
ComputeDPMTA.C | |
ComputeDPMTA.h | |
ComputeEField.C | |
ComputeEField.h | |
ComputeEwald.C | |
ComputeEwald.h | |
ComputeExt.C | |
ComputeExt.h | |
ComputeFmmSerial.C | |
ComputeFmmSerial.h | |
ComputeFullDirect.C | |
ComputeFullDirect.h | |
ComputeFullDirectBase.h | |
ComputeGBIS.C | |
ComputeGBIS.inl | |
ComputeGBISCUDAKernel.h | |
ComputeGBISser.C | |
ComputeGBISser.h | |
ComputeGlobal.C | |
ComputeGlobal.h | |
ComputeGlobalMasterVirialCUDAKernel.cu | |
ComputeGlobalMasterVirialCUDAKernel.h | |
ComputeGlobalMsgs.C | |
ComputeGlobalMsgs.h | |
ComputeGridForce.C | |
ComputeGridForce.h | |
ComputeGridForceCUDA.C | |
ComputeGridForceCUDA.h | |
ComputeGridForceCUDAKernel.cu | |
ComputeGridForceCUDAKernel.h | |
ComputeGromacsPair.C | |
ComputeGromacsPair.h | |
ComputeGromacsPair.inl | |
ComputeGroupRes1GroupCUDAKernel.cu | |
ComputeGroupRes1GroupCUDAKernel.h | |
ComputeGroupRes2GroupCUDAKernel.cu | |
ComputeGroupRes2GroupCUDAKernel.h | |
ComputeGroupRestraintsCUDA.C | |
ComputeGroupRestraintsCUDA.h | |
ComputeHomePatch.C | |
ComputeHomePatch.h | |
ComputeHomePatches.C | |
ComputeHomePatches.h | |
ComputeHomeTuples.h | |
ComputeImpropers.C | |
ComputeImpropers.h | |
ComputeLCPO.C | |
ComputeLCPO.h | |
ComputeLjPmeSerial.C | |
ComputeLjPmeSerial.h | |
ComputeLonepairsCUDA.C | |
ComputeLonepairsCUDA.h | |
ComputeLonepairsCUDAKernel.cu | |
ComputeLonepairsCUDAKernel.h | |
ComputeMap.C | |
ComputeMap.h | |
ComputeMgr.C | |
ComputeMgr.h | |
ComputeMoa.C | |
ComputeMoa.h | |
ComputeMsm.C | |
ComputeMsm.h | |
ComputeMsmMsa.C | |
ComputeMsmMsa.h | |
ComputeMsmSerial.C | |
ComputeMsmSerial.h | |
ComputeNonbondedAlch.h | |
ComputeNonbondedBase.h | |
ComputeNonbondedBase2.h | |
ComputeNonbondedBase2KNL.h | |
ComputeNonbondedCUDAExcl.C | |
ComputeNonbondedCUDAExcl.h | |
ComputeNonbondedCUDAExcl.inl | |
ComputeNonbondedFEP.C | |
ComputeNonbondedGo.C | |
ComputeNonbondedInl.h | |
ComputeNonbondedLES.C | |
ComputeNonbondedPair.C | |
ComputeNonbondedPair.h | |
ComputeNonbondedPProf.C | |
ComputeNonbondedSelf.C | |
ComputeNonbondedSelf.h | |
ComputeNonbondedSplitting.h | |
ComputeNonbondedStd.C | |
ComputeNonbondedTabEnergies.C | |
ComputeNonbondedTI.C | |
ComputeNonbondedUtil.C | |
ComputeNonbondedUtil.h | |
ComputePatch.C | |
ComputePatch.h | |
ComputePatchPair.C | |
ComputePatchPair.h | |
ComputePme.C | |
ComputePme.h | |
ComputePmeCUDA.C | |
ComputePmeCUDA.h | |
ComputePmeCUDAKernel.cu | |
ComputePmeCUDAKernel.h | |
ComputePmeCUDAMgr.C | |
ComputePmeCUDAMgr.h | |
ComputeQM.C | |
ComputeQM.h | |
ComputeRestraints.C | |
ComputeRestraints.h | |
ComputeRestraintsCUDA.C | |
ComputeRestraintsCUDA.h | |
ComputeRestraintsCUDAKernel.cu | |
ComputeRestraintsCUDAKernel.h | |
ComputeSelfTuples.h | |
ComputeSMDCUDA.C | |
ComputeSMDCUDA.h | |
ComputeSMDCUDAKernel.cu | |
ComputeSMDCUDAKernel.h | |
ComputeSphericalBC.C | |
ComputeSphericalBC.h | |
ComputeStir.C | |
ComputeStir.h | |
ComputeTclBC.C | |
ComputeTclBC.h | |
ComputeThole.C | |
ComputeThole.h | |
ComputeThole.inl | |
ConfigList.C | |
ConfigList.h | |
Controller.C | |
Controller.h | |
CudaComputeGBISKernel.cu | |
CudaComputeGBISKernel.h | |
CudaComputeNonbonded.C | |
CudaComputeNonbonded.h | |
CudaComputeNonbondedInteractions.h | |
CudaComputeNonbondedKernel.cu | |
CudaComputeNonbondedKernel.h | |
CudaComputeNonbondedKernel.hip.h | |
CudaComputeNonbondedKernelHip.cu | |
CudaGlobalMasterClient.C | |
CudaGlobalMasterClient.h | |
CudaGlobalMasterClientKernel.cu | |
CudaGlobalMasterClientKernel.h | |
CudaGlobalMasterServer.C | |
CudaGlobalMasterServer.h | |
CudaGlobalMasterServerKernel.cu | |
CudaGlobalMasterServerKernel.h | |
CudaNonbondedTables.C | |
CudaNonbondedTables.h | |
CudaPmeSolver.C | |
CudaPmeSolver.h | |
CudaPmeSolverUtil.C | |
CudaPmeSolverUtil.h | |
CudaPmeSolverUtilKernel.cu | |
CudaPmeSolverUtilKernel.h | |
CudaRecord.h | |
CudaTileListKernel.cu | |
CudaTileListKernel.h | |
CudaTileListKernel.hip.h | |
CudaTileListKernelHip.cu | |
CudaUtils.C | |
CudaUtils.h | |
DataExchanger.C | |
DataExchanger.h | |
DataStream.C | |
DataStream.h | |
dcdlib.C | |
dcdlib.h | |
Debug.h | |
DeviceCUDA.C | |
DeviceCUDA.h | |
DeviceCUDAkernel.cu | |
diffbinpdb.c | |
dlloader.h | |
DumpBench.C | |
DumpBench.h | |
DumpBenchParams.h | |
dumpdcd.c | |
eabf.h | |
eabf1D.C | |
eabf1D.h | |
eabf2D.C | |
eabf2D.h | |
eabffunc.C | |
eabffunc.h | |
eabfTcl.C | |
elements.h | |
erf.C | |
fitrms.C | |
fitrms.h | |
fixdcd.c | |
flipbinpdb.c | |
flipdcd.c | |
FreeEnergyAssert.C | |
FreeEnergyAssert.h | |
FreeEnergyEnums.h | |
FreeEnergyGroup.C | |
FreeEnergyGroup.h | |
FreeEnergyLambda.C | |
FreeEnergyLambda.h | |
FreeEnergyLambdMgr.C | |
FreeEnergyLambdMgr.h | |
FreeEnergyMain.C | |
FreeEnergyParse.C | |
FreeEnergyParse.h | |
FreeEnergyRestrain.C | |
FreeEnergyRestrain.h | |
FreeEnergyRMgr.C | |
FreeEnergyRMgr.h | |
FreeEnergyVector.C | |
FreeEnergyVector.h | |
fstream_namd.C | |
fstream_namd.h | |
GBData.h | |
GlobalMaster.C | |
GlobalMaster.h | |
GlobalMasterColvars.h | |
GlobalMasterEasy.C | |
GlobalMasterEasy.h | |
GlobalMasterFreeEnergy.C | |
GlobalMasterFreeEnergy.h | |
GlobalMasterIMD.C | |
GlobalMasterIMD.h | |
GlobalMasterMisc.C | |
GlobalMasterMisc.h | |
GlobalMasterServer.C | |
GlobalMasterServer.h | |
GlobalMasterSMD.C | |
GlobalMasterSMD.h | |
GlobalMasterSymmetry.C | |
GlobalMasterSymmetry.h | |
GlobalMasterTcl.C | |
GlobalMasterTcl.h | |
GlobalMasterTest.C | |
GlobalMasterTest.h | |
GlobalMasterTMD.C | |
GlobalMasterTMD.h | |
GoMolecule.C | |
GridForceGrid.C | |
GridForceGrid.h | |
GridForceGrid.inl | |
GridforceGridCUDA.C | |
GridforceGridCUDA.h | |
GridforceGridCUDAKernel.h | |
GromacsTopFile.C | |
GromacsTopFile.h | |
GroupRestraintsParam.C | |
GroupRestraintsParam.h | |
heap.C | |
heap.h | |
HipDefines.h | |
HomePatch.C | |
HomePatch.h | |
HomePatchList.h | |
Hydrogen.h | |
imd.C | |
imd.h | |
IMDOutput.C | |
IMDOutput.h | |
InfoStream.C | |
InfoStream.h | |
largefiles.h | |
Lattice.h | |
LdbCoordinator.C | |
LdbCoordinator.h | |
LincsSolver.C | |
LincsSolver.h | |
LjPmeBase.h | |
LjPmeCompute.C | |
LjPmeCompute.h | |
LjPmeKSpace.C | |
LjPmeKSpace.h | |
LjPmeMgr.C | |
LjPmeMgr.h | |
LjPmeRealSpace.C | |
LjPmeRealSpace.h | |
LJTable.C | |
LJTable.h | |
loaddcd.c | |
main.C | |
main.h | |
mainfunc.C | |
MathArray.h | |
Matrix4.C | |
Matrix4.h | |
Matrix4Symmetry.C | |
Matrix4Symmetry.h | |
Measure.C | |
Measure.h | |
memusage.C | |
memusage.h | |
MGridforceParams.C | |
MGridforceParams.h | |
MigrateAtomsMsg.C | |
MigrateAtomsMsg.h | |
Migration.h | |
MigrationBondedCUDAKernel.cu | |
MigrationBondedCUDAKernel.h | |
MigrationCUDAKernel.cu | |
MigrationCUDAKernel.h | |
Molecule.C | |
Molecule.h | |
Molecule2.C | |
MoleculeQM.C | |
MShakeKernel.cu | |
MShakeKernel.h | |
msm.c | |
msm.h | |
msm_defn.h | |
msm_longrng.c | |
msm_longrng_sprec.c | |
msm_setup.c | |
msm_shortrng.c | |
msm_shortrng_sprec.c | |
MsmMacros.h | |
MsmMap.h | |
MStream.C | |
MStream.h | |
NamdCentLB.C | |
NamdCentLB.h | |
NamdDummyLB.C | |
NamdDummyLB.h | |
NamdEventsProfiling.h | |
NamdHybridLB.C | |
NamdHybridLB.h | |
NamdOneTools.C | |
NamdOneTools.h | |
NamdState.C | |
NamdState.h | |
NamdTypes.h | |
Node.C | |
Node.h | |
ObjectArena.h | |
Output.C | |
Output.h | |
OwnerBox.h | |
packmsg.h | |
ParallelIOMgr.C | |
ParallelIOMgr.h | |
Parameters.C | |
Parameters.h | |
parm.C | |
parm.h | |
ParseOptions.C | |
ParseOptions.h | |
Patch.C | |
Patch.h | |
PatchData.C | |
PatchData.h | |
PatchMap.C | |
PatchMap.h | |
PatchMap.inl | |
PatchMgr.C | |
PatchMgr.h | |
PatchTypes.h | |
PDB.C | |
PDB.h | |
PDBData.C | |
PDBData.h | |
PluginIOMgr.C | |
PluginIOMgr.h | |
PmeBase.h | |
PmeBase.inl | |
PmeKSpace.C | |
PmeKSpace.h | |
PmeRealSpace.C | |
PmeRealSpace.h | |
PmeSolver.C | |
PmeSolver.h | |
PmeSolverUtil.h | |
Pointer.h | |
PressureProfile.h | |
Priorities.h | |
ProcessorPrivate.C | |
ProcessorPrivate.h | |
ProxyMgr.C | |
ProxyMgr.h | |
ProxyPatch.C | |
ProxyPatch.h | |
pub3dfft.C | |
pub3dfft.h | |
Random.h | |
ReadAmberParm.C | |
ReadAmberParm.h | |
Rebalancer.C | |
Rebalancer.h | |
RecBisection.C | |
RecBisection.h | |
ReductionMgr.C | |
ReductionMgr.h | |
RefineOnly.C | |
RefineOnly.h | |
RefineTorusLB.C | |
RefineTorusLB.h | |
ReserveArray.h | |
ResizeArray.h | |
ResizeArrayIter.h | |
ResizeArrayPrimIter.h | |
ResizeArrayRaw.h | |
ScriptTcl.C | |
ScriptTcl.h | |
Sequencer.C | |
Sequencer.h | |
SequencerCUDA.C | |
SequencerCUDA.h | |
SequencerCUDAKernel.cu | |
SequencerCUDAKernel.h | |
Set.C | |
Set.h | |
Settle.C | |
Settle.h | |
SimParameters.C | |
SimParameters.h | |
SortableResizeArray.h | |
SortAtoms.C | |
SortAtoms.h | |
SortedArray.h | |
sortreplicas.c | |
strlib.C | |
strlib.h | |
structures.h | |
Sync.C | |
Sync.h | |
TclCommands.C | |
TclCommands.h | |
TclVec.C | |
Tensor.h | |
TestArray.C | |
TestArray.h | |
Thread.h | |
TorusLB.C | |
TorusLB.h | |
TupleString.h | |
TupleTypesCUDA.h | |
UniqueSet.h | |
UniqueSetIter.h | |
UniqueSetRaw.h | |
UniqueSortedArray.h | |
varsizemsg.h | |
Vector.h | |
vmdsock.C | |
vmdsock.h | |
wkfutils.c | |
wkfutils.h | |
WorkDistrib.C | |
WorkDistrib.h | |
xxh3.h | |
xxhash.h | |